Evidence map›Paper›PMID 39152143›Full record

ArticleScientific data2024

Chromosome-scale genome assembly and annotation of Paspalum notatum Flüggé var. saurae.

Juan Manuel Vega, Maricel Podio, Julie Orjuela, Lorena A Siena, Silvina C Pessino, Marie Christine Combes, Cedric Mariac, Emidio Albertini, Fulvio Pupilli, Juan Pablo A Ortiz and 1 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Transcriptome-guided breeding for Paspalum notatum: producing apomictic hybrids with enhanced omega-3 content.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Juan Manuel Vega *Laboratorio de Biología Molecular, Instituto de Investigaciones en Ciencias Agrarias de Rosario (IICAR) CONICET-UNR, Facultad de Ciencias Agrarias, Campo Experimental Villarino, Universidad Nacional de Rosario, Zavalla (S2125ZAA), Santa Fe, Argentina.
Maricel Podio *Laboratorio de Biología Molecular, Instituto de Investigaciones en Ciencias Agrarias de Rosario (IICAR) CONICET-UNR, Facultad de Ciencias Agrarias, Campo Experimental Villarino, Universidad Nacional de Rosario, Zavalla (S2125ZAA), Santa Fe, Argentina.
Julie Orjuela *DIADE, Univ. Montpellier, CIRAD, IRD, Montpellier, France.
Lorena A SienaLaboratorio de Biología Molecular, Instituto de Investigaciones en Ciencias Agrarias de Rosario (IICAR) CONICET-UNR, Facultad de Ciencias Agrarias, Campo Experimental Villarino, Universidad Nacional de Rosario, Zavalla (S2125ZAA), Santa Fe, Argentina.
Silvina C PessinoLaboratorio de Biología Molecular, Instituto de Investigaciones en Ciencias Agrarias de Rosario (IICAR) CONICET-UNR, Facultad de Ciencias Agrarias, Campo Experimental Villarino, Universidad Nacional de Rosario, Zavalla (S2125ZAA), Santa Fe, Argentina.
Marie Christine CombesDIADE, Univ. Montpellier, CIRAD, IRD, Montpellier, France.
Cedric MariacDIADE, Univ. Montpellier, CIRAD, IRD, Montpellier, France.
Emidio AlbertiniDepartment of Agricultural, Food and Environmental Science, University of Perugia, 06121, Perugia, Italy.
Fulvio PupilliInstitute of Biosciences and Bioresources (IBBR), National Research Council (CNR), 06128, Perugia, Italy.
Juan Pablo A OrtizLaboratorio de Biología Molecular, Instituto de Investigaciones en Ciencias Agrarias de Rosario (IICAR) CONICET-UNR, Facultad de Ciencias Agrarias, Campo Experimental Villarino, Universidad Nacional de Rosario, Zavalla (S2125ZAA), Santa Fe, Argentina. ortiz@iicar-conicet.gob.ar.ORCID 0000-0001-8460-6154
Olivier LeblancDIADE, Univ. Montpellier, CIRAD, IRD, Montpellier, France. olivier.leblanc@ird.fr.ORCID 0000-0003-3641-1875

Funding

Consejo Nacional de Investigaciones Científicas y Técnicas (National Scientific and Technical Research Council) PIP 11220200101680COConsejo Nacional de Investigaciones Científicas y Técnicas (National Scientific and Technical Research Council) PUE 22920160100043COEC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Skłodowska-Curie Actions (H2020 Excellent Science - Marie Skłodowska-Curie Actions) 101007438EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Skłodowska-Curie Actions (H2020 Excellent Science - Marie Skłodowska-Curie Actions) 872417Ministero dell'Istruzione, dell'Università e della Ricerca (Ministry of Education, University and Research) P2022KFJB5Ministero dell'Istruzione, dell'Università e della Ricerca (Ministry of Education, University and Research) PRIN 2022Z4HLLJMinistry of Science, Technology and Productive Innovation, Argentina | Agencia Nacional de Promoción Científica y Tecnológica (National Agency for Science and Technology, Argentina) PICT-2017-1956Ministry of Science, Technology and Productive Innovation, Argentina | Agencia Nacional de Promoción Científica y Tecnológica (National Agency for Science and Technology, Argentina) PICT 2019-02153Ministry of Science, Technology and Productive Innovation, Argentina | Agencia Nacional de Promoción Científica y Tecnológica (National Agency for Science and Technology, Argentina) PICT 2019 3414Universidad Nacional de Rosario (National University of Rosario) PIP 80020190300021UR
6 · The paper itself

Abstract

Paspalum notatum Flüggé is an economically important subtropical fodder grass that is widely used in the Americas. Here, we report a new chromosome-scale genome assembly and annotation of a diploid biotype collected in the center of origin of the species. Using Oxford Nanopore long reads, we generated a 557.81 Mb genome assembly (N50 = 56.1 Mb) with high gene completeness (BUSCO = 98.73%). Genome annotation identified 320 Mb (57.86%) of repetitive elements and 45,074 gene models, of which 36,079 have a high level of confidence. Further characterisation included the identification of 59 miRNA precursors together with their putative targets. The present work provides a comprehensive genomic resource for P. notatum improvement and a reference frame for functional and evolutionary research within the genus.

Indexed as

Genome, PlantMolecular Sequence AnnotationPaspalumChromosomes, PlantMicroRNAsRepetitive Sequences, Nucleic AcidMicroRNAs

Identifiers

PMID39152143
PMCPMC11329641

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.