Evidence map›Paper›PMID 39153022›Full record

ArticlePlanta2024

Phenotypic and transcriptomics characterization uncovers genes underlying tuber yield traits and gene expression marker development in potato under aeroponics.

Rasna Zinta, Jagesh Kumar Tiwari, Tanuja Buckseth, Umesh Goutam, Rajesh Kumar Singh, Ajay Kumar Thakur, Shwetank Singh, Vinod Kumar, Manoj Kumar

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In one paragraph

Article in Planta, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rasna ZintaIndian Council of Agricultural Research-Central Potato Research Institute, Shimla, Himachal Pradesh, India.
Jagesh Kumar TiwariIndian Council of Agricultural Research-Central Potato Research Institute, Shimla, Himachal Pradesh, India. jagesh.kumar@icar.gov.in.ORCID http://orcid.org/0000-0002-3936-1458
Tanuja BucksethIndian Council of Agricultural Research-Central Potato Research Institute, Shimla, Himachal Pradesh, India.
Umesh GoutamSchool of Bioengineering and Biosciences, Lovely Professional University, Phagwara, Punjab, India.
Rajesh Kumar SinghIndian Council of Agricultural Research-Central Potato Research Institute, Shimla, Himachal Pradesh, India.
Ajay Kumar ThakurIndian Council of Agricultural Research-Central Potato Research Institute, Shimla, Himachal Pradesh, India.
Shwetank SinghIndian Council of Agricultural Research- Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh, India.
Vinod KumarIndian Council of Agricultural Research-Central Potato Research Institute, Shimla, Himachal Pradesh, India.
Manoj KumarIndian Council of Agricultural Research-Central Potato Research Institute, Shimla, Himachal Pradesh, India.

Funding

Indian Council of Agricultural Research ICAR (CABin)
6 · The paper itself

Abstract

MAIN

conclusionTranscriptome analysis in potato varieties revealed genes associated with tuber yield-related traits and developed gene expression markers. This study aimed to identify genes involved in high tuber yield and its component traits in test potato varieties (Kufri Frysona, Kufri Khyati, and Kufri Mohan) compared to control (Kufri Sutlej). The aeroponic evaluation showed significant differences in yield-related traits in the varieties. Total RNA sequencing was performed using tuber and leaf tissues on the Illumina platform. The high-quality reads (QV > 25) mapping with the reference potato genomes revealed statistically significant (P < 0.05) differentially expressed genes (DEGs) into two categories: up-regulated (> 2 Log

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantPhenotypePlant TubersSolanum tuberosumTranscriptomeGene OntologyGenes, PlantGenetic MarkersPlant LeavesSequence Analysis, RNAGenetic MarkersAeroponicsGenesPlant phenotypeRoot architectureRT-qPCRSolanum tuberosum L.Transcriptome sequencingTuber yield traits

Identifiers

PMID39153022

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.