Evidence map›Paper›PMID 39153567›Full record

ArticleOsteoarthritis and cartilage2025

H3K9me3 loss and ERVs activation as hallmarks for osteoarthritis progression and knee joint aging.

Ye Liu, Vladimir Molchanov, Yaguang Zhao, Di Lu, Huadie Liu, H Josh Jang, Tao Yang

Abstract read
In one paragraph

Article in Osteoarthritis and cartilage, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ye LiuDepartment of Cell Biology, Van Andel Institute, Grand Rapids, MI 49503, USA. Electronic address: ye.liu@vai.org.
Vladimir MolchanovDepartment of Cell Biology, Van Andel Institute, Grand Rapids, MI 49503, USA. Electronic address: vladimir.molchanov@vai.edu.
Yaguang ZhaoDepartment of Cell Biology, Van Andel Institute, Grand Rapids, MI 49503, USA. Electronic address: yaguang.zhao@vai.org.
Di LuDepartment of Cell Biology, Van Andel Institute, Grand Rapids, MI 49503, USA. Electronic address: di.lu@vai.org.
Huadie LiuDepartment of Cell Biology, Van Andel Institute, Grand Rapids, MI 49503, USA. Electronic address: 2023001077@usc.edu.cn.
H Josh JangDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA. Electronic address: josh.jang@vai.org.
Tao YangDepartment of Cell Biology, Van Andel Institute, Grand Rapids, MI 49503, USA. Electronic address: tao.yang@vai.org.

Funding

Role of Desumoylase SENP6 in Joint Aging and Osteoarthritis DevelopmentR01AG061086 · NIA · VAN ANDEL RESEARCH INSTITUTE · PI YANG, TAO · 2019 to 2023
$2.5M
Endogenous retrovirus in joint aging and osteoarthritis developmentR01AG083568 · NIA · VAN ANDEL RESEARCH INSTITUTE · PI Ting Wang, Tao Yang · 2023 to 2026
$2.4M
NIA NIH HHS R01 AG061086NIA NIH HHS R01 AG083568
6 · The paper itself

Abstract

objectiveThis study aims to link aberrant endogenous retroviruses (ERVs) activation and osteoarthritis (OA) progression by comparing the chromatin accessibility and transcriptomic landscapes of diseased or intact joint tissues of OA patients.

methodWe performed ERVs-centric analysis on published ATAC-seq and RNA-seq data from OA patients' cartilage tissues. Here, we compared the outer region of the lateral tibial plateau, representing intact cartilage, to the inner region of the medial tibial plateau, representing damaged cartilage. In addition, cartilage tissue sections from OA patients and post-traumatic OA mouse models were assayed for global H3K9me3 abundance through immunohistochemistry staining.

resultsChromatin accessibility and transcription of ERVs, particularly from evolutionarily "intermediate age" ERVs families (ERV1 and ERVL), were enriched and elevated in OA cartilage. This integrative analysis suggests that H3K9me3-related heterochromatin loss might be mechanistically connected to ERV activation in OA tissue. We further verified that global H3K9me3 levels were reduced in diseased cartilage relative to intact tissue in OA patients and injury-induced OA mice.

conclusionThe findings suggest a compelling hypothesis that the loss of H3K9me3, either due to aging or cellular stressors, may lead to ERVs reactivation that contributes to tissue inflammation and OA progression. This study unveils the intricate relationship between epigenetic alterations, ERVs activation, and OA, paving the way for potential therapeutic interventions targeting these pathogenic mechanisms.

Indexed as

Cartilage, ArticularDisease ProgressionEndogenous RetrovirusesHistonesOsteoarthritis, KneeAgingAnimalsHumansKnee JointMaleMiceHistonesEndogenous retrovirusesH3K9me3HeterochromatinOsteoarthritisTransposable elements

Identifiers

PMID39153567
PMCPMC11663117

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.