Evidence map›Paper›PMID 39155345›Full record

ArticleJournal of human genetics2024

A novel homozygous nonsense variant of STX2 underlies non-obstructive azoospermia in a consanguineous Chinese family.

Qi Fang, Lanxi Ran, Xinying Bi, Jianyong Di, Ye Liu, Fengqin Xu, Binbin Wang

Abstract read
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Article in Journal of human genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Molecular characterization of Alkaptonuria in Brazilian patients.Molecular genetics and metabolism reports · 2026
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qi Fang *Department of Reproduction, Tianjin First Central Hospital, Tianjin, China.
Lanxi Ran *Center for Genetics, National Research Institute for Family Planning, Beijing, China.
Xinying BiCenter for Genetics, National Research Institute for Family Planning, Beijing, China.
Jianyong DiDepartment of Reproduction, Tianjin First Central Hospital, Tianjin, China.
Ye LiuDepartment of Reproduction, Tianjin First Central Hospital, Tianjin, China.
Fengqin XuDepartment of Reproduction, Tianjin First Central Hospital, Tianjin, China. xufengqin1968@126.com.
Binbin WangCenter for Genetics, National Research Institute for Family Planning, Beijing, China. wbbahu@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Male infertility is a widespread population health concern, causing various degrees of adverse fertility outcomes. We determined the genetic cause of an infertile male from a consanguineous family, expanding the mutant spectrum of male infertility. A non-obstructive azoospermia (NOA) patient was recruited, and histological type of human testicular tissue of the patient categorized as maturation arrest. We identified a novel loss-of-function variant of syntaxin 2 (STX2) (c.142C>T:p.Gln48*) by performing Whole-exome sequencing (WES) on the NOA patient from a consanguineous Chinese family. Sanger sequencing confirmed the p.Gln48* variant was maternally and paternally inherited. The variant was predicted to be deleterious and resulted in aberrant changes to structure and function of STX2 by In silico analysis. In summary, we reported for the first time that a nonsense variant occurred in the exon region of STX2 in an infertile male presenting with NOA, which was beneficial for diagnosis and therapies of NOA.

Indexed as

AzoospermiaCodon, NonsenseExome SequencingAdultChinaConsanguinityEast Asian PeopleHomozygoteHumansInfertility, MaleMalePedigreeQa-SNARE ProteinsCodon, NonsenseQa-SNARE Proteins

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.