Evidence map›Paper›PMID 39162616›Full record

ArticleeLife2024

Genetic code expansion, click chemistry, and light-activated PI3K reveal details of membrane protein trafficking downstream of receptor tyrosine kinases.

Duk-Su Koh, Anastasiia Stratiievska, Subhashis Jana, Shauna C Otto, Teresa M Swanson, Anthony Nhim, Sara Carlson, Marium Raza, Ligia Araujo Naves, Eric N Senning and 2 more

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Duk-Su Koh *University of Washington, Department of Physiology & Biophysics, Seattle, United States.ORCID https://orcid.org/0000-0003-0406-2308
Anastasiia Stratiievska *University of Washington, Department of Physiology & Biophysics, Seattle, United States.
Subhashis JanaDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, United States.
Shauna C OttoUniversity of Washington, Department of Physiology & Biophysics, Seattle, United States.
Teresa M SwansonUniversity of Washington, Department of Physiology & Biophysics, Seattle, United States.
Anthony NhimUniversity of Washington, Department of Physiology & Biophysics, Seattle, United States.
Sara CarlsonUniversity of Washington, Department of Physiology & Biophysics, Seattle, United States.
Marium RazaUniversity of Washington, Department of Physiology & Biophysics, Seattle, United States.
Ligia Araujo NavesUniversity of Washington, Department of Physiology & Biophysics, Seattle, United States.
Eric N SenningDepartment of Neuroscience, University of Texas at Austin, Austin, United States.
Ryan A MehlDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, United States.ORCID https://orcid.org/0000-0003-2932-4941
Sharona E GordonUniversity of Washington, Department of Physiology & Biophysics, Seattle, United States.ORCID https://orcid.org/0000-0002-0914-3361

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Sakeneh Zraika · 1986 to 2026
$41.4M
Vision Research CoreP30EY001730 · NEI · UNIVERSITY OF WASHINGTON · PI Jay Neitz · 1985 to 2026
$23.5M
Inflammatory hyperalgesia mediated by TRPV1, the pepper spray receptor in the corR01EY017564 · NEI · UNIVERSITY OF WASHINGTON · PI GORDON, SHARONA E · 2006 to 2022
$6.5M
The GCE4All Center: Unleashing the Potential of Genetic Code Expansion for Biomedical ResearchRM1GM144227 · NIGMS · OREGON STATE UNIVERSITY · PI RYAN A MEHL · 2022 to 2026
$6.2M
Bioengineering Cardiovascular Training GrantT32EB001650 · NIBIB · UNIVERSITY OF WASHINGTON · PI REGNIER, MICHAEL · 2004 to 2019
$3.6M
Conformational Energetics and Heterogeneity to Reveal Gating Mechanisms of TRPV and TRPM Ion ChannelsR35GM145225 · NIGMS · UNIVERSITY OF WASHINGTON · PI Sharona E Gordon · 2022 to 2026
$3.4M
Electrophysiology-Optical Workstation for Ion Channel BiophysicsS10RR025429 · NCRR · UNIVERSITY OF WASHINGTON · PI GORDON, SHARONA E · 2009 to 2009
$499k
National Science Foundation NSF-2054824National Science Foundation NSF-2129209NCRR NIH HHS S10 RR025429NEI NIH HHS P30 EY001730NEI NIH HHS P30EY001730NEI NIH HHS R01 EY017564NIDDK NIH HHS P30 DK017047NIDDK NIH HHS P30DK017047NIGMS NIH HHS R35 GM145225NIGMS NIH HHS R35GM145225NIGMS NIH HHS RM1 GM144227NIGMS NIH HHS RM1GM144227NIH HHS S10RR025429
6 · The paper itself

Abstract

Ligands such as insulin, epidermal growth factor, platelet-derived growth factor, and nerve growth factor (NGF) initiate signals at the cell membrane by binding to receptor tyrosine kinases (RTKs). Along with G-protein-coupled receptors, RTKs are the main platforms for transducing extracellular signals into intracellular signals. Studying RTK signaling has been a challenge, however, due to the multiple signaling pathways to which RTKs typically are coupled, including MAP/ERK, PLCγ, and Class 1A phosphoinositide 3-kinases (PI3K). The multi-pronged RTK signaling has been a barrier to isolating the effects of any one downstream pathway. Here, we used optogenetic activation of PI3K to decouple its activation from other RTK signaling pathways. In this context, we used genetic code expansion to introduce a click chemistry noncanonical amino acid into the extracellular side of membrane proteins. Applying a cell-impermeant click chemistry fluorophore allowed us to visualize delivery of membrane proteins to the plasma membrane in real time. Using these approaches, we demonstrate that activation of PI3K, without activating other pathways downstream of RTK signaling, is sufficient to traffic the TRPV1 ion channels and insulin receptors to the plasma membrane.

Indexed as

Click ChemistryPhosphatidylinositol 3-KinasesProtein TransportReceptor Protein-Tyrosine KinasesAnimalsCell MembraneGenetic CodeHEK293 CellsHumansLightMembrane ProteinsOptogeneticsSignal TransductionTRPV Cation ChannelsMembrane ProteinsPhosphatidylinositol 3-KinasesReceptor Protein-Tyrosine KinasesTRPV1 protein, humanTRPV Cation Channelsbiochemistrychemical biologyclick chemistryhumanmembrane proteinmolecular biophysicsratstructural biologytrafficking

Identifiers

PMID39162616
PMCPMC11335347

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.