Evidence map›Paper›PMID 39164488›Full record

ArticleNature cell biology2024

Retinoic acid induces human gastruloids with posterior embryo-like structures.

Nobuhiko Hamazaki, Wei Yang, Connor A Kubo, Chengxiang Qiu, Beth K Martin, Riddhiman K Garge, Samuel G Regalado, Eva K Nichols, Sriram Pendyala, Nicholas Bradley and 5 more

Abstract read
In one paragraph

Article in Nature cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Retinoic acid in health and disease.Signal transduction and targeted therapy · 2026
    Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. New developments and applications of human organoids.Nature reviews. Molecular cell biology · 2026
    Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. N2B27 media formulations influence gastruloid development.Development (Cambridge, England) · 2025
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Nobuhiko Hamazaki *Department of Genome Sciences, University of Washington, Seattle, WA, USA. hamazaki@uw.edu.ORCID 0000-0001-9228-233X
Wei Yang *Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Connor A KuboDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9579-2917
Chengxiang QiuDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0002-6346-8669
Beth K MartinDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0002-9661-014X
Riddhiman K GargeDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Samuel G RegaladoDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Eva K NicholsDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Sriram PendyalaDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Nicholas BradleyDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Douglas M FowlerDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7614-1713
Choli LeeDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0002-8901-1835
Riza M DazaDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0003-1635-8675
Sanjay SrivatsanDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Jay ShendureDepartment of Genome Sciences, University of Washington, Seattle, WA, USA. shendure@uw.edu.ORCID 0000-0002-1516-1865

Funding

UW 4-Dimensional Genomic Organization of Mammalian Embryogenesis CenterUM1HG011586 · NHGRI · UNIVERSITY OF WASHINGTON · PI DISTECHE, CHRISTINE M., NOBLE, WILLIAM STAFFORD · 2020 to 2024
$10.3M
Versatile, exponentially scalable methods for single cell molecular profilingR01HG010632 · NHGRI · UNIVERSITY OF WASHINGTON · PI Jay Ashok Shendure, Bruce Colston Trapnell · 2019 to 2026
$5.9M
NHGRI NIH HHS R01 HG010632NHGRI NIH HHS UM1 HG011586U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) UM1HG011586
6 · The paper itself

Abstract

Gastruloids are a powerful in vitro model of early human development. However, although elongated and composed of all three germ layers, human gastruloids do not morphologically resemble post-implantation human embryos. Here we show that an early pulse of retinoic acid (RA), together with later Matrigel, robustly induces human gastruloids with posterior embryo-like morphological structures, including a neural tube flanked by segmented somites and diverse cell types, including neural crest, neural progenitors, renal progenitors and myocytes. Through in silico staging based on single-cell RNA sequencing, we find that human RA-gastruloids progress further than other human or mouse embryo models, aligning to E9.5 mouse and CS11 cynomolgus monkey embryos. We leverage chemical and genetic perturbations of RA-gastruloids to confirm that WNT and BMP signalling regulate somite formation and neural tube length in the human context, while transcription factors TBX6 and PAX3 underpin presomitic mesoderm and neural crest, respectively. Looking forward, RA-gastruloids are a robust, scalable model for decoding early human embryogenesis.

Indexed as

Neural CrestPAX3 Transcription FactorSomitesT-Box Domain ProteinsTretinoinAnimalsEmbryo, MammalianEmbryonic DevelopmentGastrulaGene Expression Regulation, DevelopmentalHumansMacaca fascicularisMesodermMiceNeural TubeSignal TransductionPAX3 protein, humanPAX3 Transcription FactorT-Box Domain ProteinsTretinoin

Identifiers

PMID39164488
PMCPMC11469962

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.