Evidence map›Paper›PMID 39174501›Full record

ArticleNature communications2024

Structural insights into Frizzled3 through nanobody modulators.

James Hillier, Yuguang Zhao, Loic Carrique, Tomas Malinauskas, Reinis R Ruza, Tao-Hsin Chang, Gangshun Yi, Helen M E Duyvesteyn, Jing Yu, Weixian Lu and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. MultilevelCurrent research in structural biology · 2026
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Frizzled receptors: gatekeepers of Wnt signaling in development and disease.Frontiers in cell and developmental biology · 2025
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

James Hillier *Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Yuguang Zhao *Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. yuguang@strubi.ox.ac.uk.ORCID 0000-0001-8916-8552
Loic CarriqueDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0001-5332-8593
Tomas MalinauskasDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0002-4847-5529
Reinis R RuzaDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Tao-Hsin ChangDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0001-7242-2585
Gangshun YiDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0009-0004-6509-4893
Helen M E DuyvesteynDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Jing YuDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Weixian LuDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Els PardonStructural Biology Brussels, Vrije Universiteit Brussel, VUB, Brussels, Belgium.ORCID 0000-0002-2466-0172
Jan SteyaertStructural Biology Brussels, Vrije Universiteit Brussel, VUB, Brussels, Belgium.ORCID 0000-0002-3825-874X
Yanan ZhuDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0003-1025-7929
Tao NiDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0001-7268-0306
E Yvonne JonesDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. yvonne@strubi.ox.ac.uk.ORCID 0000-0002-3834-1893

Funding

Cancer Research UK (CRUK) C375/A17721Cancer Research UK (CRUK) DRCRPG-May23/100002Wellcome TrustWellcome Trust (Wellcome) 203141/Z/16/ZWellcome Trust (Wellcome) 223133/Z/21/Z
6 · The paper itself

Abstract

The Wnt receptor Frizzled3 (FZD3) is important for brain axonal development and cancer progression. We report structures of FZD3 in complex with extracellular and intracellular binding nanobodies (Nb). The crystal structure of Nb8 in complex with the FZD3 cysteine-rich domain (CRD) reveals that the nanobody binds at the base of the lipid-binding groove and can compete with Wnt5a. Nb8 fused with the Dickkopf-1 C-terminal domain behaves as a FZD3-specific Wnt surrogate, activating β-catenin signalling. The cryo-EM structure of FZD3 in complex with Nb9 reveals partially resolved density for the CRD, which exhibits positional flexibility, and a transmembrane conformation that resembles active GPCRs. Nb9 binds to the cytoplasmic region of FZD3 at the putative Dishevelled (DVL) or G protein-binding site, competes with DVL binding, and inhibits GαS coupling. In combination, our FZD3 structures with nanobody modulators map extracellular and intracellular interaction surfaces of functional, and potentially therapeutic, relevance.

Indexed as

Frizzled ReceptorsSingle-Domain AntibodiesAnimalsbeta CateninBinding SitesCryoelectron MicroscopyCrystallography, X-RayDishevelled ProteinsHEK293 CellsHumansModels, MolecularProtein BindingProtein DomainsWnt Signaling Pathwaybeta CateninDishevelled ProteinsFrizzled ReceptorsFZD3 protein, humanSingle-Domain Antibodies

Identifiers

PMID39174501
PMCPMC11341715

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.