Evidence map›Paper›PMID 39181133›Full record

ArticleCell2024

The Fanconi anemia pathway induces chromothripsis and ecDNA-driven cancer drug resistance.

Justin L Engel, Xiao Zhang, Mingming Wu, Yan Wang, Jose Espejo Valle-Inclán, Qing Hu, Kidist S Woldehawariat, Mathijs A Sanders, Agata Smogorzewska, Jin Chen and 3 more

Abstract read
In one paragraph

Article in Cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Targeting extrachromosomal DNA in human cancers.Nature reviews. Drug discovery · 2026
    Review
  9. Review
  10. Micronuclei: origins, assays, mechanisms, diseases and treatments.Signal transduction and targeted therapy · 2026
    Review
  11. Article
  12. Telomere Crisis Shapes Cancer Evolution.Cold Spring Harbor perspectives in biology · 2026
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Extrachromosomal DNA and cancer: function, formation, and clinical implications.Journal of experimental & clinical cancer research : CR · 2026
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Justin L EngelDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Xiao ZhangDivision of Dermatology, Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Mingming WuDivision of Dermatology, Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Yan WangDivision of Dermatology, Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA; Department of Molecular and Medical Pharmacology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Jose Espejo Valle-InclánEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK.
Qing HuDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Kidist S WoldehawariatDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Mathijs A SandersCancer, Ageing and Somatic Mutation Programme, Wellcome Sanger Institute, Hinxton CB10 1SD, UK; Department of Hematology, Erasmus MC Cancer Institute, Rotterdam 3015 GD, the Netherlands.
Agata SmogorzewskaLaboratory of Genome Maintenance, Rockefeller University, New York, NY 10065, USA.
Jin ChenCecil H. and Ida Green Center for Reproductive Biology Sciences, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Isidro Cortés-CirianoEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK.
Roger S LoDivision of Dermatology, Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA; Department of Molecular and Medical Pharmacology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA; Jonsson Comprehensive Cancer Center, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Peter LyDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA. Electronic address: peter.ly@utsouthwestern.edu.

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Kathryn Ann O'Donnell · 2010 to 2026
$53.7M
Spatiotemporal Tumor Analytics for Guiding Sequential Targeted-Inhibitor: Immunotherapy Combinations (ST-Analytics)U54CA274509 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI Claudia Ludwig · 2022 to 2026
$15.6M
Project 3: Modeling and overcoming resistance to melanoma immunotherapyP01CA244118 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MORICEAU, GATIEN P · 2020 to 2024
$12.8M
Preventing MAPK inhibitor resistance in melanoma by targeting genomic instability and immune resistanceR01CA176111 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ROGER S LO · 2013 to 2026
$5.4M
Genomic Instability from Fragmented Chromosomes in MicronucleiR35GM146610 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Peter Ly · 2022 to 2026
$2.3M
Understanding Replication Stress Response in Mammalian CellsR01GM140400 · NIGMS · ROCKEFELLER UNIVERSITY · PI SMOGORZEWSKA, AGATA · 2021 to 2024
$1.4M
Mechanisms of Chromosome Shattering from Defective DNA ReplicationR01CA289435 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Peter Ly · 2024 to 2026
$1.3M
Dissecting the role of the Fanconi anemia pathway in chromothripsisF31CA295091 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI ENGEL, JUSTIN · 2024 to 2025
$53k
NCI NIH HHS F31 CA295091NCI NIH HHS P01 CA244118NCI NIH HHS P30 CA142543NCI NIH HHS R01 CA176111NCI NIH HHS R01 CA289435NCI NIH HHS U54 CA274509NIGMS NIH HHS R01 GM140400NIGMS NIH HHS R35 GM146610
6 · The paper itself

Abstract

Chromothripsis describes the catastrophic shattering of mis-segregated chromosomes trapped within micronuclei. Although micronuclei accumulate DNA double-strand breaks and replication defects throughout interphase, how chromosomes undergo shattering remains unresolved. Using CRISPR-Cas9 screens, we identify a non-canonical role of the Fanconi anemia (FA) pathway as a driver of chromothripsis. Inactivation of the FA pathway suppresses chromosome shattering during mitosis without impacting interphase-associated defects within micronuclei. Mono-ubiquitination of FANCI-FANCD2 by the FA core complex promotes its mitotic engagement with under-replicated micronuclear chromosomes. The structure-selective SLX4-XPF-ERCC1 endonuclease subsequently induces large-scale nucleolytic cleavage of persistent DNA replication intermediates, which stimulates POLD3-dependent mitotic DNA synthesis to prime shattered fragments for reassembly in the ensuing cell cycle. Notably, FA-pathway-induced chromothripsis generates complex genomic rearrangements and extrachromosomal DNA that confer acquired resistance to anti-cancer therapies. Our findings demonstrate how pathological activation of a central DNA repair mechanism paradoxically triggers cancer genome evolution through chromothripsis.

Indexed as

ChromothripsisDrug Resistance, NeoplasmFanconi AnemiaAnimalsCell Line, TumorCRISPR-Cas SystemsDNA Breaks, Double-StrandedDNA RepairDNA ReplicationEndonucleasesFanconi Anemia Complementation Group D2 ProteinFanconi Anemia Complementation Group ProteinsHumansMiceMitosisNeoplasmsEndonucleasesFANCD2 protein, humanFANCI protein, humanFanconi Anemia Complementation Group D2 ProteinFanconi Anemia Complementation Group ProteinsRecombinasesSLX4 protein, humanchromothripsisDNA repairDNA replicationecDNAFanconi anemiafragile sitesgenome rearrangementsgenomic instabilitymicronucleimitosis

Identifiers

PMID39181133
PMCPMC11490392

What Socratic holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.