Evidence map›Paper›PMID 39186748›Full record

ArticlePloS one2024

Description and genome analysis of a novel archaeon isolated from a syntrophic pyrite-forming enrichment culture and reclassification of Methanospirillum hungatei strains GP1 and SK as Methanospirillum purgamenti sp. nov.

Nathalie Pradel, Manon Bartoli, Michel Koenen, Nicole Bale, Meina Neumann-Schaal, Cathrin Spröer, Boyke Bunk, Manfred Rohde, Michael Pester, Stefan Spring

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Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Notification of changes in taxonomic opinion previously published outside theInternational journal of systematic and evolutionary microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nathalie PradelCNRS/INSU, IRD, MIO, UM 110, Aix-Marseille Université, Université du Sud Toulon-Var, Marseille, France.
Manon BartoliCNRS/INSU, IRD, MIO, UM 110, Aix-Marseille Université, Université du Sud Toulon-Var, Marseille, France.
Michel KoenenRoyal Netherlands Institute for Sea Research, Texel, Netherlands.
Nicole BaleRoyal Netherlands Institute for Sea Research, Texel, Netherlands.
Meina Neumann-SchaalResearch Group Metabolomics, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.ORCID 0000-0002-1641-019X
Cathrin SpröerDepartment Bioinformatics, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Boyke BunkDepartment Bioinformatics, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Manfred RohdeCentral Facility for Microscopy, Helmholtz Centre for Infection Research, HZI, Braunschweig, Germany.
Michael PesterDepartment Microorganisms, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Stefan SpringDepartment Microorganisms, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.ORCID 0000-0001-6247-0938

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The archaeal isolate J.3.6.1-F.2.7.3T was obtained from an anaerobic enrichment culture, where it may play an important role in methane production during pyrite formation. The new isolate formed a species-level clade with Methanospirillum hungatei strains GP1 and SK, which is separate from the type strain JF-1T. Cultivation-independent surveys indicate the occurrence of this phylogenetic group in sediments and anaerobic digesters. The abundance of this clade appears to be negatively affected by high nitrogen loads, indicating a sensitivity to certain nitrogen compounds that is not known in M. hungatei JF-1T. The relatively large core genome of this Methanospirillum clade is indicative of niche specialization and efficient control of horizontal gene transfer. Genes for nitrogenase and F420-dependent secondary alcohol dehydrogenase contribute to the metabolic versatility of this lineage. Characteristics of the new isolate such as the ability to utilize 2-propanol as an electron donor or the requirement for acetate as a carbon source are found also in the strains GP1 and SK, but not in the type strain M. hungatei JF-1T. Based on the genomic differences to related species, a new species within the genus Methanospirillum is proposed with the name M. purgamenti sp. nov. The determined phenotypic characteristics support this proposal and indicate a metabolic adaptation to a separate ecological niche.

Indexed as

Genome, ArchaealMethanospirillumPhylogenyIronMethaneRNA, Ribosomal, 16SSulfidesIronMethaneRNA, Ribosomal, 16SSulfides

Identifiers

PMID39186748
PMCPMC11346949

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.