Evidence map›Paper›PMID 39199332›Full record

ArticleBiomolecules2024

Clinal Variation in Short Tandem Repeats Linked to Gene Expression in Sunflower (

Chathurani Ranathunge, Mark E Welch

Abstract read
In one paragraph

Article in Biomolecules, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Chathurani RanathungeDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA.ORCID 0000-0003-1901-2119
Mark E WelchDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA.ORCID 0000-0001-7708-1089

Funding

National Science Foundation MCB-1158521
6 · The paper itself

Abstract

Short tandem repeat (STR) variation is rarely explored as a contributor to adaptive evolution. An intriguing mechanism involving STRs suggests that STRs function as "tuning knobs" of adaptation whereby stepwise changes in STR allele length have stepwise effects on phenotypes. Previously, we tested the predictions of the "tuning knob" model at the gene expression level by conducting an RNA-Seq experiment on natural populations of common sunflower (

Indexed as

Gene Expression Regulation, PlantHelianthusMicrosatellite RepeatsAllelesGenetic VariationGenotypeadaptationCHUP1gene expressionHelianthus annuusmicrosatelliteRNA-Seqshort tandem repeatsSTRsunflower

Identifiers

PMID39199332
PMCPMC11352406

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.