Evidence map›Paper›PMID 39206121›Full record

ArticleJournal of biomedical optics2024

Convolutional neural network-based regression analysis to predict subnuclear chromatin organization from two-dimensional optical scattering signals.

Yazdan Al-Kurdi, Cem Direkoǧlu, Meryem Erbilek, Dizem Arifler

Abstract read
In one paragraph

Article in Journal of biomedical optics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yazdan Al-KurdiMiddle East Technical University, Northern Cyprus Campus, Electrical and Electronics Engineering Program, Kalkanli, Turkey.
Cem DirekoǧluMiddle East Technical University, Northern Cyprus Campus, Electrical and Electronics Engineering Program, Kalkanli, Turkey.ORCID 0000-0001-7709-4082
Meryem ErbilekMiddle East Technical University, Northern Cyprus Campus, Computer Engineering Program, Kalkanli, Turkey.
Dizem AriflerMiddle East Technical University, Northern Cyprus Campus, Physics Group, Kalkanli, Turkey.ORCID 0000-0002-3389-2186

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Significance: Azimuth-resolved optical scattering signals obtained from cell nuclei are sensitive to changes in their internal refractive index profile. These two-dimensional signals can therefore offer significant insights into chromatin organization. Aim: We aim to determine whether two-dimensional scattering signals can be used in an inverse scheme to extract the spatial correlation length Approach: Since an analytical formulation that links azimuth-resolved signals to Results: The results show agreement between the true and predicted values for both Conclusions: Our results reveal that CNN-based regression can be a powerful approach for exploiting the information content of two-dimensional optical scattering signals and hence monitoring chromatin organization in a quantitative manner.

Indexed as

Cell NucleusChromatinNeural Networks, ComputerAlgorithmsHumansMachine LearningRefractometryRegression AnalysisScattering, RadiationChromatinchromatin organizationconvolutional neural networkfinite-difference time-domain modelingmachine learningoptical scatteringregression analysis

Identifiers

PMID39206121
PMCPMC11350520

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.