Evidence map›Paper›PMID 39208798›Full record

ArticleCell2024

Cryo-EM-based discovery of a pathogenic parvovirus causing epidemic mortality by black wasting disease in farmed beetles.

Judit J Penzes, Martin Holm, Samantha A Yost, Jason T Kaelber

Abstract read
In one paragraph

Article in Cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Distinct YY dinucleotide periodicity in adeno-associated virus DNA.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. CryoSeek: A strategy for bioentity discovery using cryoelectron microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Judit J PenzesInstitute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA. Electronic address: judit.penzes@rutgers.edu.
Martin HolmInstitute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
Samantha A YostResearch and Early Development, REGENXBIO Inc., Rockville, MD, USA.
Jason T KaelberInstitute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA. Electronic address: jason.kaelber@rutgers.edu.

Funding

Translational Research Support CoreP30ES005022 · NIEHS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI BRIAN T BUCKLEY · 1988 to 2026
$47.4M
An Orbitrap Tribrid mass spectrometer and nanoflow LC system to upgrade the proteomics facility at Rutgers-New Brunswick and Robert Wood Johnson Medical SchoolS10OD025140 · OD · RBHS-ROBERT WOOD JOHNSON MEDICAL SCHOOL · PI LOBEL, PETER · 2019 to 2019
$921k
Improving cryoEM and cryoFIB performance through amelioration of mechanical stress in vitreous ice.R21GM140345 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI KAELBER, JASON T · 2021 to 2022
$432k
Spectrometer Upgrade for a Small Animal Imaging Core MRIS10OD030291 · OD · RUTGERS, THE STATE UNIV OF N.J. · PI YURKOW, EDWARD J · 2021 to 2021
$226k
NIEHS NIH HHS P30 ES005022NIGMS NIH HHS R21 GM140345NIH HHS S10 OD025140NIH HHS S10 OD030291
6 · The paper itself

Abstract

We use cryoelectron microscopy (cryo-EM) as a sequence- and culture-independent diagnostic tool to identify the etiological agent of an agricultural pandemic. For the past 4 years, American insect-rearing facilities have experienced a distinctive larval pathology and colony collapse of farmed Zophobas morio (superworm). By means of cryo-EM, we discovered the causative agent: a densovirus that we named Zophobas morio black wasting virus (ZmBWV). We confirmed the etiology of disease by fulfilling Koch's postulates and characterizing strains from across the United States. ZmBWV is a member of the family Parvoviridae with a 5,542 nt genome, and we describe intersubunit interactions explaining its expanded internal volume relative to human parvoviruses. Cryo-EM structures at resolutions up to 2.1 Å revealed single-strand DNA (ssDNA) ordering at the capsid inner surface pinned by base-binding pockets in the capsid inner surface. Also, we demonstrated the prophylactic potential of non-pathogenic strains to provide cross-protection in vivo.

Indexed as

ColeopteraCryoelectron MicroscopyAnimalsCapsidCapsid ProteinsDensovirusDNA, Single-StrandedGenome, ViralLarvaModels, MolecularParvoviridae InfectionsParvovirusPhylogenyCapsid ProteinsDNA, Single-Strandedcapsid-DNA interactionscapsid structurecryo-EMdensovirusdiagnostic virologyemerging infectious diseasesentomologyparvovirussuperwormZophobas morio

Identifiers

PMID39208798
PMCPMC11781814

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.