Evidence map›Paper›PMID 39208801›Full record

ArticleCell reports. Medicine2024

Proteo-metabolomics and patient tumor slice experiments point to amino acid centrality for rewired mitochondria in fibrolamellar carcinoma.

Donald Long, Marina Chan, Mingqi Han, Zeal Kamdar, Rosanna K Ma, Pei-Yin Tsai, Adam B Francisco, Joeva Barrow, David B Shackelford, Mark Yarchoan and 5 more

Abstract read
In one paragraph

Article in Cell reports. Medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Donald LongDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA. Electronic address: dl964@cornell.edu.
Marina ChanDivision of Human Biology, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Mingqi HanJonsson Comprehensive Cancer Center, UCLA, Los Angeles, CA, USA.
Zeal KamdarDepartment of Oncology, Sidney Kimmel Comprehensive Cancer Center, Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Rosanna K MaDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Pei-Yin TsaiDivision of Nutritional Sciences, Cornell University, Ithaca, NY, USA.
Adam B FranciscoDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Joeva BarrowDivision of Nutritional Sciences, Cornell University, Ithaca, NY, USA.
David B ShackelfordJonsson Comprehensive Cancer Center, UCLA, Los Angeles, CA, USA.
Mark YarchoanDepartment of Oncology, Sidney Kimmel Comprehensive Cancer Center, Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Matthew J McBrideDepartment of Chemical Biology, Ernest Mario School of Pharmacy, Rutgers University, Piscataway, NJ, USA.
Lukas M OrreDepartment of Oncology and Pathology, Karolinska Institute, SciLifeLab, Solna, Sweden.
Nathaniel M VacantiDivision of Nutritional Sciences, Cornell University, Ithaca, NY, USA.
Taranjit S GujralDivision of Human Biology, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Praveen SethupathyDepartment of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA. Electronic address: pr46@cornell.edu.

Funding

Neoantigen-specific T cell responses for Fibrolamellar Hepatocellular CarcinomaR01CA265009 · NCI · JOHNS HOPKINS UNIVERSITY · PI Paul G. Thomas, Mark Yarchoan · 2022 to 2026
$3.6M
Exploiting A Critical Vulnerability To Glutamine Antimetabolite Therapy in Fibrolamellar Hepatocellular Carcinoma (FLC)R01CA289041 · NCI · JOHNS HOPKINS UNIVERSITY · PI Mark Yarchoan · 2024 to 2026
$1.9M
Targeting PLK1 signaling for the treatment of fibrolamellar carcinomaR01CA273081 · NCI · FRED HUTCHINSON CANCER CENTER · PI Taran Singh Gujral · 2023 to 2026
$1.9M
NCI NIH HHS R01 CA265009NCI NIH HHS R01 CA273081NCI NIH HHS R01 CA289041
6 · The paper itself

Abstract

Fibrolamellar carcinoma (FLC) is a rare, lethal, early-onset liver cancer with a critical need for new therapeutics. The primary driver in FLC is the fusion oncoprotein, DNAJ-PKAc, which remains challenging to target therapeutically. It is critical, therefore, to expand understanding of the FLC molecular landscape to identify druggable pathways/targets. Here, we perform the most comprehensive integrative proteo-metabolomic analysis of FLC. We also conduct nutrient manipulation, respirometry analyses, as well as key loss-of-function assays in FLC tumor tissue slices from patients. We propose a model of cellular energetics in FLC pointing to proline anabolism being mediated by ornithine aminotransferase hyperactivity and ornithine transcarbamylase hypoactivity with serine and glutamine catabolism fueling the process. We highlight FLC's potential dependency on voltage-dependent anion channel (VDAC), a mitochondrial gatekeeper for anions including pyruvate. The metabolic rewiring in FLC that we propose in our model, with an emphasis on mitochondria, can be exploited for therapeutic vulnerabilities.

Indexed as

Amino AcidsCarcinoma, HepatocellularMetabolomicsMitochondriaFemaleHumansLiver NeoplasmsProteomicsVoltage-Dependent Anion ChannelsAmino AcidsVoltage-Dependent Anion Channelsalpha-ketoglutaratefibrolamellar carcinomaglucoseglutaminemetabolomicsmitochondriaprolineproteomicspyruvateserine

Identifiers

PMID39208801
PMCPMC11528240

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.