Evidence map›Paper›PMID 39211503›Full record

ArticleChemical science2024

Probing machine learning models based on high throughput experimentation data for the discovery of asymmetric hydrogenation catalysts.

Adarsh V Kalikadien, Cecile Valsecchi, Robbert van Putten, Tor Maes, Mikko Muuronen, Natalia Dyubankova, Laurent Lefort, Evgeny A Pidko

Abstract read
In one paragraph

Article in Chemical science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Adarsh V KalikadienInorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology Van der Maasweg 9, 2629 HZ Delft The Netherlands e.a.pidko@tudelft.nl.ORCID https://orcid.org/0000-0002-5414-3424
Cecile ValsecchiDiscovery, Product Development and Supply, Janssen Cilag S.p.A. Viale Fulvio Testi, 280/6 20126 Milano Italy.ORCID https://orcid.org/0000-0002-5535-053X
Robbert van PuttenDiscovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium llefort@its.jnj.com.ORCID https://orcid.org/0000-0001-5074-6706
Tor MaesDiscovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium llefort@its.jnj.com.
Mikko MuuronenDiscovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium llefort@its.jnj.com.ORCID https://orcid.org/0000-0001-9647-7070
Natalia DyubankovaDiscovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium llefort@its.jnj.com.ORCID https://orcid.org/0000-0002-5892-3778
Laurent LefortDiscovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium llefort@its.jnj.com.ORCID https://orcid.org/0000-0003-2973-6540
Evgeny A PidkoInorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology Van der Maasweg 9, 2629 HZ Delft The Netherlands e.a.pidko@tudelft.nl.ORCID https://orcid.org/0000-0001-9242-9901

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enantioselective hydrogenation of olefins by Rh-based chiral catalysts has been extensively studied for more than 50 years. Naively, one would expect that everything about this transformation is known and that selecting a catalyst that induces the desired reactivity or selectivity is a trivial task. Nonetheless, ligand engineering or selection for any new prochiral olefin remains an empirical trial-error exercise. In this study, we investigated whether machine learning techniques could be used to accelerate the identification of the most efficient chiral ligand. For this purpose, we used high throughput experimentation to build a large dataset consisting of results for Rh-catalyzed asymmetric olefin hydrogenation, specially designed for applications in machine learning. We showcased its alignment with existing literature while addressing observed discrepancies. Additionally, a computational framework for the automated and reproducible quantum-chemistry based featurization of catalyst structures was created. Together with less computationally demanding representations, these descriptors were fed into our machine learning pipeline for both out-of-domain and in-domain prediction tasks of selectivity and reactivity. For out-of-domain purposes, our models provided limited efficacy. It was found that even the most expensive descriptors do not impart significant meaning to the model predictions. The in-domain application, while partly successful for predictions of conversion, emphasizes the need for evaluating the cost-benefit ratio of computationally intensive descriptors and for tailored descriptor design. Challenges persist in predicting enantioselectivity, calling for caution in interpreting results from small datasets. Our insights underscore the importance of dataset diversity with broad substrate inclusion and suggest that mechanistic considerations could improve the accuracy of statistical models.

Identifiers

PMID39211503
PMCPMC11352728

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.