Evidence map›Paper›PMID 39214909›Full record

ArticleBiochemical genetics2025

Therapeutic Potential of PLK1, KIF4A, CDCA5, UBE2C, CDT1, SKA3, AURKB, and PTTG1 Genes in Triple-Negative Breast Cancer: Correlating Their Expression with Sensitivity to GSK 461364 and IKK 16 Drugs.

Najmeh Bashari, Mohammadamin Naghizadeh, Mehrnaz Kalhor Chegini, Ensieh Sagheb Sadeghi, Atefeh Zamani, Mohammad Mahdevar

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Article in Biochemical genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Najmeh BashariDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
Mohammadamin NaghizadehDalian Medical University, Liaoning, China.
Mehrnaz Kalhor CheginiDepartment of Genetics, Faculty of Advanced Science and Technology, Tehran Medical Sciences, Islamic Azad University, Tehran, Iran.
Ensieh Sagheb SadeghiGenius Gene, Genetics and Biotechnology Company, Isfahan, Iran.
Atefeh ZamaniGenius Gene, Genetics and Biotechnology Company, Isfahan, Iran. atefeh.zamani20@gmail.com.
Mohammad MahdevarGenius Gene, Genetics and Biotechnology Company, Isfahan, Iran. mahdevar416@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The treatment of triple-negative breast cancer (TNBC) has been associated with challenges due to the lack of expression of ER, PR, and HER2 receptors in tumor cells. This study aimed to identify genes with potential therapeutic targets in TNBC. Data from the cancer genome atlas regarding breast cancer (BC) were downloaded. After initial preprocessing, cancer samples were categorized into four groups: TNBC, HER2-positive, luminal A, and luminal B. Gene expression differences between these groups were calculated, focusing on genes that showed differential expression in TNBC. A protein-protein interaction network was conducted to identify hub genes among the candidate genes related to TNBC. The protein expression of candidate genes was assessed using immunohistochemistry data from the human protein atlas. Drug resistance and sensitivity associated with hub genes were identified using data from PharmacoDB. TNBC samples and the RT-qPCR method were used to confirm the results. Our findings revealed that eight genes, namely PLK1, KIF4A, CDCA5, UBE2C, CDT1, SKA3, AURKB, and PTTG1, had significant upregulation at the RNA level in TNBC subgroup compared to other subgroups and could be considered hub genes in TNBC. Compared to other subgroups, their expression level in TNBC samples had high sensitivity and specificity. RT-qPCR results also demonstrated a significant increase in levels of SKA3 and PTTG1 in the TNBC compared to healthy tissue and other subgroups. The protein expression of these genes was notably high in some BC samples. PharmacoDB data showed that some candidate genes were closely linked to drug sensitivity of GSK 461364 and IKK 16. The results of this study showed a significant increase in the expression level of PLK1, KIF4A, CDCA5, UBE2C, CDT1, SKA3, AURKB, and PTTG1 in TNBC compared to other BC subgroups. These genes show considerable promise as therapeutic targets for the TNBC subgroup.

Indexed as

Triple Negative Breast NeoplasmsAurora Kinase BCell Cycle ProteinsDrug Resistance, NeoplasmFemaleGene Expression Regulation, NeoplasticHumansKinesinsPolo-Like Kinase 1Protein Serine-Threonine KinasesProto-Oncogene ProteinsUbiquitin-Conjugating EnzymesAURKB protein, humanAurora Kinase BCell Cycle ProteinsKIF4A protein, humanKinesinsPolo-Like Kinase 1Protein Serine-Threonine KinasesProto-Oncogene ProteinsUBE2C protein, humanUbiquitin-Conjugating EnzymesBreast cancerDrug sensitivityGene expressionReal time PCRTriple-negative

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.