Evidence map›Paper›PMID 39214970›Full record

ArticleNature communications2024

Sde proteins coordinate ubiquitin utilization and phosphoribosylation to establish and maintain the Legionella replication vacuole.

Kristin M Kotewicz, Mengyun Zhang, Seongok Kim, Meghan S Martin, Atish Roy Chowdhury, Albert Tai, Rebecca A Scheck, Ralph R Isberg

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. mBio · 2026
    Article
  5. Discovery of Glycation-Derived Cross-links at Arginine.Journal of the American Chemical Society · 2026
    Article
  6. iScience · 2026
    Article
  7. Article
  8. A diverse family of bacterial deubiquitinases is defined by theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Kristin M Kotewicz *Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Mengyun Zhang *Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Seongok Kim *Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Meghan S MartinDepartment of Chemistry, Tufts University, Medford, MA, USA.ORCID 0009-0006-9688-1309
Atish Roy ChowdhuryDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Albert TaiDepartment of Immunology, Tufts University School of Medicine, Boston, MA, USA.ORCID 0000-0001-7771-0850
Rebecca A ScheckDepartment of Chemistry, Tufts University, Medford, MA, USA.ORCID 0000-0003-0916-0572
Ralph R IsbergDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA. ralph.isberg@tufts.edu.ORCID 0000-0002-8330-3554

Funding

MOLECULAR GENETICS OF BASIC CELL FUNCTIONST32GM007310 · NIGMS · TUFTS UNIVERSITY BOSTON · PI CAMILLI, ANDREW · 1987 to 2020
$3.9M
The interface between L. pneumophila manipulation of host endoplasmic reticulum and innate immune subterfugeR01AI146245 · NIAID · TUFTS UNIVERSITY BOSTON · PI ISBERG, RALPH R. · 2020 to 2024
$3.3M
Control of Endoplasmic Reticulum Tubule Formation by Legionella pneumophilaR01AI113211 · NIAID · TUFTS UNIVERSITY BOSTON · PI ISBERG, RALPH R. · 2014 to 2018
$2.7M
The Chemistry and Biology of Protein GlycationR01GM132422 · NIGMS · TUFTS UNIVERSITY MEDFORD · PI SCHECK, REBECCA · 2020 to 2023
$1.2M
NIAID NIH HHS R01 AI113211NIAID NIH HHS R01 AI146245NIGMS NIH HHS R01 GM132422NIGMS NIH HHS T32 GM007310U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI113211U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI146245
6 · The paper itself

Abstract

The Legionella pneumophila Sde family of translocated proteins promotes host tubular endoplasmic reticulum (ER) rearrangements that are tightly linked to phosphoribosyl-ubiquitin (pR-Ub) modification of Reticulon 4 (Rtn4). Sde proteins have two additional activities of unclear relevance to the infection process: K63 linkage-specific deubiquitination and phosphoribosyl modification of polyubiquitin (pR-Ub). We show here that the deubiquitination activity (DUB) stimulates ER rearrangements while pR-Ub protects the replication vacuole from cytosolic surveillance by autophagy. Loss of DUB activity is tightly linked to lowered pR-Ub modification of Rtn4, consistent with the DUB activity fueling the production of pR-Ub-Rtn4. In parallel, phosphoribosyl modification of polyUb, in a region of the protein known as the isoleucine patch, prevents binding by the autophagy adapter p62. An inability of Sde mutants to modify polyUb results in immediate p62 association, a critical precursor to autophagic attack. The ability of Sde WT to block p62 association decays quickly after bacterial infection, as predicted by the presence of previously characterized L. pneumophila effectors that inactivate Sde and remove polyUb. In sum, these results show that the accessory Sde activities act to stimulate ER rearrangements and protect from host innate immune sensing in a temporal fashion.

Indexed as

AutophagyBacterial ProteinsEndoplasmic ReticulumLegionella pneumophilaUbiquitinUbiquitinationVacuolesAnimalsHumansLegionnaires' DiseaseMembrane ProteinsMicePolyubiquitinBacterial ProteinsMembrane ProteinsPolyubiquitinSdeA protein, Legionella pneumophilaUbiquitin

Identifiers

PMID39214970
PMCPMC11364549

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.