Evidence map›Paper›PMID 39222484›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2024

Secondary Sphere Lewis Acid Activated Heme Superoxo Adducts Mimic Crucial Non-Covalent Interactions in IDO/TDO Heme Dioxygenases.

Garrett B Tolbert, Samith B Jayawardana, Yuri Lee, Junqi Sun, Fengrui Qu, Logan M Whitt, Hannah S Shafaat, Gayan B Wijeratne

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Deciphering Tryptophan Oxygenation: Key Modulators of 2-Oxindole Formation in MarE.Angewandte Chemie (International ed. in English) · 2025
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Garrett B TolbertDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, AL 35487, United States.ORCID https://orcid.org/0000-0003-1071-3875
Samith B JayawardanaDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, AL 35487, United States.ORCID https://orcid.org/0000-0002-6251-7692
Yuri LeeDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, 90095, United States.
Junqi SunDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, AL 35487, United States.ORCID https://orcid.org/0009-0009-3076-7601
Fengrui QuDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, 90095, United States.ORCID https://orcid.org/0000-0002-9975-2573
Logan M WhittDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, AL 35487, United States.ORCID https://orcid.org/0000-0002-2339-6920
Hannah S ShafaatDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, 90095, United States.ORCID https://orcid.org/0000-0003-0793-4650
Gayan B WijeratneDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, AL 35487, United States.ORCID https://orcid.org/0000-0001-7609-6406

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Omer Jamy · 1985 to 2026
$165.9M
UAB-UCSD O'Brien Core Center for Acute Kidney Injury ResearchP30DK079337 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI AGARWAL, ANUPAM · 2008 to 2022
$18.3M
Metallobiochemistry of Mn/Fe protein cofactorsR35GM128852 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Hannah S Shafaat · 2018 to 2026
$2.3M
5500 Q-Trap Mass SpectrometerS10RR027822 · NCRR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BARNES, STEPHEN · 2010 to 2010
$469k
Division of Chemistry CHE-2045005NCI NIH HHS P30 CA013148NCRR NIH HHS S10 RR027822NIDDK NIH HHS P30 DK079337NIGMS NIH HHS GM128852NIGMS NIH HHS R35 GM128852
6 · The paper itself

Abstract

Heme enzymes play a central role in a medley of reactivities within a wide variety of crucial biological systems. Their active sites are highly decorated with pivotal evolutionarily optimized non-covalent interactions that precisely choreograph their biological functionalities with specific regio-, stereo-, and chemo-selectivities. Gaining a clear comprehension of how such weak interactions within the active sites control reactivity offers powerful information to be implemented into the design of future therapeutic agents that target these heme enzymes. To shed light on such critical details pertaining to tryptophan dioxygenating heme enzymes, this study investigates the indole dioxygenation reactivities of Lewis acid-activated heme superoxo model systems, wherein an unprecedented kinetic behavior is revealed. In that, the activated heme superoxo adduct is observed to undergo indole dioxygenation with the intermediacy of a non-covalently organized precursor complex, which forms prior to the rate-limiting step of the overall reaction landscape. Spectroscopic and theoretical characterization of this precursor complex draws close parallels to the ternary complex of heme dioxygenases, which has been postulated to be of crucial importance for successful 2,3-dioxygenative cleavage of indole moieties.

Indexed as

HemeIndoleamine-Pyrrole 2,3,-DioxygenaseIndolesLewis AcidsCatalytic DomainDioxygenasesKineticsTryptophanTryptophan OxygenaseDioxygenasesHemeindoleIndoleamine-Pyrrole 2,3,-DioxygenaseIndolesLewis AcidsTryptophanTryptophan OxygenaseHeme dioxygenasesHeme superoxideLewis acidsReaction MechanismsTernary complex

Identifiers

PMID39222484
PMCPMC11747931

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.