Evidence map›Paper›PMID 39227404›Full record

ArticleNature communications2024

Molecular mechanism of IKK catalytic dimer docking to NF-κB substrates.

Changqing Li, Stefano Moro, Kateryna Shostak, Francis J O'Reilly, Mariel Donzeau, Andrea Graziadei, Alastair G McEwen, Dominique Desplancq, Pierre Poussin-Courmontagne, Thomas Bachelart and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. ProbioticGut microbes · 2026
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  2. Study on the Therapeutic Effects of Ginsenoside Rh2 in Asthma Improvement.International journal of molecular sciences · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Changqing Li *Biotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France.
Stefano Moro *Biotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France.
Kateryna ShostakLaboratory of Cancer Biology, GIGA Cancer, University of Liege, CHU, Sart-Tilman, 4000, Liege, Belgium.ORCID 0000-0002-9946-3536
Francis J O'ReillyInstitute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, Berlin, Germany.ORCID 0000-0001-9258-0150
Mariel DonzeauBiotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France.
Andrea GraziadeiInstitute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, Berlin, Germany.
Alastair G McEwenInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC) / INSERM UMR-S 1258 / CNRS UMR7104/ Université de Strasbourg, 1 rue Laurent Fries, 67400, Illkirch, France.ORCID 0000-0003-4484-3512
Dominique DesplancqBiotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France.
Pierre Poussin-CourmontagneInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC) / INSERM UMR-S 1258 / CNRS UMR7104/ Université de Strasbourg, 1 rue Laurent Fries, 67400, Illkirch, France.ORCID 0000-0003-4813-6882
Thomas BachelartBiotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France.
Mert FiskinBiotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France.
Nicolas BerrodierInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC) / INSERM UMR-S 1258 / CNRS UMR7104/ Université de Strasbourg, 1 rue Laurent Fries, 67400, Illkirch, France.
Simon PichardInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC) / INSERM UMR-S 1258 / CNRS UMR7104/ Université de Strasbourg, 1 rue Laurent Fries, 67400, Illkirch, France.ORCID 0009-0008-9765-4006
Karl BrilletInstitut Biologie Moléculaire et Cellulaire (IBMC), CNRS UPR9002, 2 allée Konrad Roentgen, 67000, Strasbourg, France.ORCID 0000-0002-7900-8923
Georges OrfanoudakisBiotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France.
Arnaud PoterszmanInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC) / INSERM UMR-S 1258 / CNRS UMR7104/ Université de Strasbourg, 1 rue Laurent Fries, 67400, Illkirch, France.ORCID 0000-0002-6702-5777
Vladimir TorbeevBiotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France.
Juri RappsilberInstitute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, Berlin, Germany.ORCID 0000-0001-5999-1310
Norman E DaveyDivision of Cancer Biology, The Institute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
Alain ChariotLaboratory of Cancer Biology, GIGA Cancer, University of Liege, CHU, Sart-Tilman, 4000, Liege, Belgium.
Katia ZanierBiotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR7242), Ecole Superieure de Biotechnologie de Strasbourg, Boulevard Sébastien Brant, 67400, Illkirch, France. zanier@unistra.fr.ORCID 0000-0002-7183-7356

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-10-IDEX-0002Agence Nationale de la Recherche (French National Research Agency) ANR-13-JSV8-0004-01Agence Nationale de la Recherche (French National Research Agency) ANR-20-SFRI-0012Fondation pour la Recherche Médicale (Foundation for Medical Research in France) DEQ20180339231Ligue Contre le Cancer CCIRGE
6 · The paper itself

Abstract

The inhibitor of κB (IκB) kinase (IKK) is a central regulator of NF-κB signaling. All IKK complexes contain hetero- or homodimers of the catalytic IKKβ and/or IKKα subunits. Here, we identify a YDDΦxΦ motif, which is conserved in substrates of canonical (IκBα, IκBβ) and alternative (p100) NF-κB pathways, and which mediates docking to catalytic IKK dimers. We demonstrate a quantitative correlation between docking affinity and IKK activity related to IκBα phosphorylation/degradation. Furthermore, we show that phosphorylation of the motif's conserved tyrosine, an event previously reported to promote IκBα accumulation and inhibition of NF-κB gene expression, suppresses the docking interaction. Results from integrated structural analyzes indicate that the motif binds to a groove at the IKK dimer interface. Consistently, suppression of IKK dimerization also abolishes IκBα substrate binding. Finally, we show that an optimized bivalent motif peptide inhibits NF-κB signaling. This work unveils a function for IKKα/β dimerization in substrate motif recognition.

Indexed as

Amino Acid MotifsI-kappa B KinaseNF-kappa BProtein MultimerizationHEK293 CellsHumansMolecular Docking SimulationNF-KappaB Inhibitor alphaPhosphorylationProtein BindingSignal TransductionSubstrate SpecificityI-kappa B KinaseNF-kappa BNF-KappaB Inhibitor alpha

Identifiers

PMID39227404
PMCPMC11371828

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.