Evidence map›Paper›PMID 39227587›Full record

ArticleNature communications2024

Phosphorylation activates master growth regulator DELLA by promoting histone H2A binding at chromatin in Arabidopsis.

Xu Huang, Rodolfo Zentella, Jeongmoo Park, Larry Reser, Dina L Bai, Mark M Ross, Jeffrey Shabanowitz, Donald F Hunt, Tai-Ping Sun

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. CDK8 phosphorylation of DELLA limits Mediator recruitment in gibberellin signaling.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Disruption ofPlant biotechnology (Tokyo, Japan) · 2026
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Xu Huang *Department of Biology, Duke University, Durham, NC, 27708, USA.ORCID 0000-0002-2711-9920
Rodolfo Zentella *Department of Biology, Duke University, Durham, NC, 27708, USA.ORCID 0000-0003-3986-6250
Jeongmoo Park *Department of Biology, Duke University, Durham, NC, 27708, USA.
Larry ReserDepartment of Chemistry, University of Virginia, Charlottesville, VA, 22904, USA.
Dina L BaiDepartment of Chemistry, University of Virginia, Charlottesville, VA, 22904, USA.
Mark M RossDepartment of Chemistry, University of Virginia, Charlottesville, VA, 22904, USA.ORCID 0009-0006-5236-2777
Jeffrey ShabanowitzDepartment of Chemistry, University of Virginia, Charlottesville, VA, 22904, USA.ORCID 0000-0001-5750-3539
Donald F HuntDepartment of Chemistry, University of Virginia, Charlottesville, VA, 22904, USA.ORCID 0000-0003-2815-6368
Tai-Ping SunDepartment of Biology, Duke University, Durham, NC, 27708, USA. tps@duke.edu.ORCID 0000-0001-5223-2936

Funding

PROTEIN SEQUENCING BY TANDEM MASS SPECTROMETRYR01GM037537 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1987 to 2023
$17.8M
Structure and Function Analyses of DELLA Interacting Proteins in ArabidopsisR01GM100051 · NIGMS · DUKE UNIVERSITY · PI SUN, TAI-PING · 2012 to 2021
$2.4M
Structural and Functional Analysis of Nucleocytoplasmic Protein O-Glycosyltransferases in PlantsR01GM150029 · NIGMS · DUKE UNIVERSITY · PI Tai-Ping Sun, Pei Zhou · 2023 to 2026
$1.9M
NIGMS NIH HHS R01 GM037537NIGMS NIH HHS R01 GM100051NIGMS NIH HHS R01 GM150029NSF | BIO | Division of Molecular and Cellular Biosciences (MCB) MCB-1818161NSF | BIO | Division of Molecular and Cellular Biosciences (MCB) MCB-2416564U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM037537U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM100051U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM150029
6 · The paper itself

Abstract

DELLA proteins are conserved master growth regulators that play a central role in controlling plant development in response to internal and environmental cues. DELLAs function as transcription regulators, which are recruited to target promoters by binding to transcription factors (TFs) and histone H2A via their GRAS domain. Recent studies showed that DELLA stability is regulated post-translationally via two mechanisms, phytohormone gibberellin-induced polyubiquitination for its rapid degradation, and Small Ubiquitin-like Modifier (SUMO)-conjugation to increase its accumulation. Moreover, DELLA activity is dynamically modulated by two distinct glycosylations: DELLA-TF interactions are enhanced by O-fucosylation, but inhibited by O-linked N-acetylglucosamine (O-GlcNAc) modification. However, the role of DELLA phosphorylation remains unclear as previous studies showing conflicting results ranging from findings that suggest phosphorylation promotes or reduces DELLA degradation to others indicating it has no effect on its stability. Here, we identify phosphorylation sites in REPRESSOR OF ga1-3 (RGA, an AtDELLA) purified from Arabidopsis by mass spectrometry analysis, and show that phosphorylation of two RGA peptides in the PolyS and PolyS/T regions enhances RGA activity by promoting H2A binding and RGA association with target promoters. Notably, phosphorylation does not affect RGA-TF interactions or RGA stability. Our study has uncovered a molecular mechanism of phosphorylation-induced DELLA activity.

Indexed as

ArabidopsisArabidopsis ProteinsChromatinGene Expression Regulation, PlantHistonesGibberellinsPhosphorylationPlants, Genetically ModifiedPromoter Regions, GeneticProtein BindingRepressor ProteinsTranscription FactorsArabidopsis ProteinsAT1G52740 protein, ArabidopsisChromatinGAI protein, ArabidopsisGibberellinsHistonesRepressor ProteinsRGA protein, ArabidopsisTranscription Factors

Identifiers

PMID39227587
PMCPMC11372120

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.