Evidence map›Paper›PMID 39230574›Full record

ArticleeLife2024

Quantitative mapping of proteasome interactomes and substrates using ProteasomeID.

Aleksandar Bartolome, Julia C Heiby, Domenico Di Fraia, Ivonne Heinze, Hannah Knaudt, Ellen Spaeth, Omid Omrani, Alberto Minetti, Maleen Hofmann, Joanna M Kirkpatrick and 2 more

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Aleksandar BartolomeLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Julia C Heiby *Leibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Domenico Di Fraia *Leibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Ivonne HeinzeLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Hannah KnaudtLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Ellen SpaethLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.ORCID https://orcid.org/0000-0002-3851-3931
Omid OmraniLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Alberto MinettiLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Maleen HofmannLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Joanna M KirkpatrickLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.
Therese DauLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.ORCID https://orcid.org/0000-0003-0251-9490
Alessandro OriLeibniz Institute on Aging - Fritz Lipmann Institute, Jena, Germany.ORCID https://orcid.org/0000-0002-3046-0871

Funding

Chan Zuckerberg Initiative 2020-221617Chan Zuckerberg Initiative 2021-230967Chan Zuckerberg Initiative 2022-250618Deutsche Forschungsgemeinschaft RTG2155Deutsches Zentrum für Herz-Kreislaufforschung 81X2800193Else Kröner-Fresenius-Stiftung 2019_A79Fritz Thyssen Stiftung 10.20.1.022MN
6 · The paper itself

Abstract

Proteasomes are essential molecular machines responsible for the degradation of proteins in eukaryotic cells. Altered proteasome activity has been linked to neurodegeneration, auto-immune disorders and cancer. Despite the relevance for human disease and drug development, no method currently exists to monitor proteasome composition and interactions in vivo in animal models. To fill this gap, we developed a strategy based on tagging of proteasomes with promiscuous biotin ligases and generated a new mouse model enabling the quantification of proteasome interactions by mass spectrometry. We show that biotin ligases can be incorporated in fully assembled proteasomes without negative impact on their activity. We demonstrate the utility of our method by identifying novel proteasome-interacting proteins, charting interactomes across mouse organs, and showing that proximity-labeling enables the identification of both endogenous and small-molecule-induced proteasome substrates.

Indexed as

Proteasome Endopeptidase ComplexAnimalsHumansMass SpectrometryMiceProtein Interaction MappingProteasome Endopeptidase Complexbiochemistrychemical biologyhumanmass spectrometrymouseproteasomeprotein degradationproteomicsproximity labelling

Identifiers

PMID39230574
PMCPMC11374303

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.