Evidence map›Paper›PMID 39231033›Full record

ArticleGenome biology and evolution2024

New Insights into the Diversity of Mitochondrial Plastid DNA.

Nguyen Nhat Nam, Nguyen Pham Anh Thi, Hoang Dang Khoa Do

Abstract read
In one paragraph

Article in Genome biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. A Compact Multipartite Mitogenome ofInternational journal of molecular sciences · 2026
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  9. The complete mitochondrial genome ofFrontiers in plant science · 2026
    Article
  10. Mitochondrial genome ofFrontiers in plant science · 2026
    Article
  11. Newly assembled mitochondrial genomes ofFrontiers in plant science · 2026
    Article
  12. Comparative organellar genomics ofFrontiers in plant science · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nguyen Nhat NamSchool of Agriculture and Aquaculture, Tra Vinh University, Tra Vinh City, Vietnam.ORCID 0000-0002-0505-5946
Nguyen Pham Anh ThiDepartment of Molecular Biology, Institute of Food and Biotechnology, Can Tho University, Can Tho City, Vietnam.ORCID 0009-0001-9732-6116
Hoang Dang Khoa DoFunctional Genomics Research Center, NTT Hi-Tech Institute, Nguyen Tat Thanh University, Ho Chi Minh City, Vietnam.ORCID 0000-0002-7970-9359

Funding

Tra Vinh University 279/2022/HĐ.HĐKH&ĐT-ĐHTV
6 · The paper itself

Abstract

The mitochondrial plastid DNAs (MTPTs) in seed plants were reported more than 40 years ago and exhibited a high diversity regarding gene content, quantity, and size. However, the mechanism that resulted in the current diversity of MTPTs in angiosperms has not been fully discovered. In this study, we sequenced and characterized the complete organelle genomes of Limonia acidissima L., a monotypic species of Rutaceae. The newly generated and previously published organelle genomes of 42 species were used to explore the diversity of MTPTs regarding quantity, gene content, size, and coverage of chloroplast genome (cpDNA) regions. The results showed that the number of MTPTs ranged from three to 74, of which the lengths were from 100 to 53,731 bp. The highest coverage of MTPTs was found in the inverted repeat region, whereas the small single repeat region had the lowest coverage. Based on the previous data and current results, we propose a scenario for the diversity of MTPTs in angiosperms. In the first stage, the whole cpDNA might migrate to the mitogenome. Then, different genomic events, such as duplication, deletion, substitution, and inversion, have occurred continuously and independently and resulted in extremely variable profiles of mitogenomes among angiosperms. Our hypothesis provides a new and possibly reliable scenario for explaining the present circumstances of MTPTs in angiosperms. However, more genomic data should be mined, and more studies should be conducted to clarify this natural phenomenon in plants.

Indexed as

DNA, MitochondrialGenome, MitochondrialEvolution, MolecularGenetic VariationGenome, ChloroplastPhylogenyPlastidsDNA, Mitochondrialchloroplast-derived sequenceDNA transferMTPTNanopore

Identifiers

PMID39231033
PMCPMC11373515

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.