Evidence map›Paper›PMID 39233476›Full record

ArticleMolecular cancer therapeutics2024

TR-107, an Agonist of Caseinolytic Peptidase Proteolytic Subunit, Disrupts Mitochondrial Metabolism and Inhibits the Growth of Human Colorectal Cancer Cells.

Michael Giarrizzo, Joseph F LaComb, Hetvi R Patel, Rohan G Reddy, John D Haley, Lee M Graves, Edwin J Iwanowicz, Agnieszka B Bialkowska

Abstract read
In one paragraph

Article in Molecular cancer therapeutics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Molecular mechanisms of mitochondrial AAA+ proteases.The Journal of biological chemistry · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Mitochondrial Regulation of Ferroptosis in Cancer Cells.International journal of biological sciences · 2025
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Michael GiarrizzoDepartment of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, New York.ORCID 0009-0006-3663-447X
Joseph F LaCombDepartment of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, New York.ORCID 0000-0002-2981-1072
Hetvi R PatelDepartment of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, New York.ORCID 0009-0005-9616-0053
Rohan G ReddyDepartment of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, New York.ORCID 0009-0002-1993-9459
John D HaleyDepartment of Pathology, Stony Brook University, Stony Brook, New York.ORCID 0000-0003-2652-4841
Lee M GravesDepartment of Pharmacology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.ORCID 0000-0002-4736-9855
Edwin J IwanowiczMadera Therapeutics, LLC, Cary, North Carolina.ORCID 0009-0005-0690-3301
Agnieszka B BialkowskaDepartment of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, New York.ORCID 0000-0003-2127-7714

Funding

Mechanisms of injury-induced pancreatic neoplasiaR01DK124342 · NIDDK · STATE UNIVERSITY NEW YORK STONY BROOK · PI BIALKOWSKA, AGNIESZKA BEATA · 2020 to 2023
$1.4M
Elucidating the mechanism of action of novel ClpP activators in activation of the mitochondrial unfolded protein response.R01GM138520 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRAVES, LEE M · 2020 to 2023
$1.3M
National Institutes of Health (NIH)National Institutes of Health (NIH) DK124342NIDDK NIH HHS R01 DK124342NIGMS NIH HHS R01 GM138520
6 · The paper itself

Abstract

Oxidative phosphorylation is an essential metabolic process for cancer proliferation and therapy resistance. The ClpXP complex maintains mitochondrial proteostasis by degrading misfolded proteins. Madera Therapeutics has developed a class of highly potent and selective small-molecule activators (TR compounds) of the ClpXP component caseinolytic peptidase proteolytic subunit (ClpP). This approach to cancer therapy eliminates substrate recognition and activates nonspecific protease function within mitochondria, which has shown encouraging preclinical efficacy in multiple malignancies. The class-leading compound TR-107 has demonstrated significantly improved potency in ClpP affinity and activation and enhanced pharmacokinetic properties over the multitargeting clinical agent ONC201. In this study, we investigate the in vitro efficacy of TR-107 against human colorectal cancer cells. TR-107 inhibited colorectal cancer cell proliferation in a dose- and time-dependent manner and induced cell cycle arrest at low nanomolar concentrations. Mechanistically, TR-107 downregulated the expression of proteins involved in the mitochondrial unfolded protein response and mitochondrial DNA transcription and translation. TR-107 attenuated oxygen consumption rate and glycolytic compensation, confirming inactivation of oxidative phosphorylation and a reduction in total cellular respiration. Multiomics analysis of treated cells indicated a downregulation of respiratory chain complex subunits and an upregulation of mitophagy and ferroptosis pathways. Further evaluation of ferroptosis revealed a depletion of antioxidant and iron toxicity defenses that could potentiate sensitivity to combinatory chemotherapeutics. Together, this study provides evidence and insight into the subcellular mechanisms employed by colorectal cancer cells in response to potent ClpP agonism. Our findings demonstrate a productive approach to disrupting mitochondrial metabolism, supporting the translational potential of TR-107.

Indexed as

Cell ProliferationColorectal NeoplasmsEndopeptidase ClpMitochondriaCell Line, TumorHumansOxidative PhosphorylationClpP protein, humanEndopeptidase Clp

Identifiers

PMID39233476
PMCPMC11614700

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.