Evidence map›Paper›PMID 39237611›Full record

ArticleScientific reports2024

Genetic variants regulating the immune response improve the prediction of COVID-19 severity provided by clinical variables.

Pablo Delgado-Wicke, Sara Fernández de Córdoba-Oñate, Emilia Roy-Vallejo, Estíbaliz Alegría-Carrasco, Diego A Rodríguez-Serrano, Amalia Lamana, Nuria Montes, Ana Nicolao-Gómez, Rosa Carracedo-Rodríguez, Ana Marcos-Jiménez and 17 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. The FunctionalInternational journal of molecular sciences · 2026
    Article
  2. Article
  3. Frontiers in immunology · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Modulation ofFrontiers in immunology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Pablo Delgado-Wicke *Molecular Biology Unit, Hospital Universitario La Princesa and Health Research Institute (IIS-Princesa), Madrid, Spain.
Sara Fernández de Córdoba-Oñate *Rheumathology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Emilia Roy-VallejoInternal Medicine Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Estíbaliz Alegría-CarrascoMolecular Biology Unit, Hospital Universitario La Princesa and Health Research Institute (IIS-Princesa), Madrid, Spain.
Diego A Rodríguez-SerranoIntensive Care Unit, Hospital Universitario La Princesa (IIS Princesa), Madrid, Spain.
Amalia LamanaCell Biology Department, Facultad de Biología, Universidad Complutense de Madrid, Madrid, Spain.
Nuria MontesRheumathology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Ana Nicolao-GómezMolecular Biology Unit, Hospital Universitario La Princesa and Health Research Institute (IIS-Princesa), Madrid, Spain.
Rosa Carracedo-RodríguezMolecular Biology Unit, Hospital Universitario La Princesa and Health Research Institute (IIS-Princesa), Madrid, Spain.
Ana Marcos-JiménezImmunology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Paula Díaz-FernándezImmunology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
José M Galván-RománInternal Medicine Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Laura Rabes-RodríguezInternal Medicine Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Marta Sanz-AlbaInternal Medicine Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Jesús Álvarez-RodríguezInternal Medicine Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Almudena Villa-MartíInternal Medicine Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Carlos Rodríguez-FrancoInternal Medicine Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Gonzalo Villapalos-GarcíaClinical Pharmacology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Pablo ZubiaurClinical Pharmacology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Francisco Abad-SantosClinical Pharmacology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Ignacio de Los SantosInternal Medicine Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Rosa P GomarizCell Biology Department, Facultad de Biología, Universidad Complutense de Madrid, Madrid, Spain.
Rosario García-VicuñaRheumathology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Cecilia Muñoz-CallejaImmunology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain.
Isidoro González-Álvaro *Rheumathology Department, Hospital Universitario La Princesa (IIS-Princesa), Madrid, Spain. isidoro.ga@ser.es.
Elena Fernández-Ruiz *Molecular Biology Unit, Hospital Universitario La Princesa and Health Research Institute (IIS-Princesa), Madrid, Spain. efruiz@salud.madrid.org.
PREDINMUN-COVID Group

Funding

Banco Santander and CRUE "Fondos Supera COVID19"European Union's Recovery. Comunidad Autónoma de Madrid. INVESTIGO 09-PIN1-00015.6/2022European Union's Recovery. Ministerio de Ciencia e Innovación. INVESTIGO 2022-C23.I01.P03.S0020-0000031INSTITUTO DE SALUD CARLOS III. Rio Hortega Grant CM19/00149INSTITUTO DE SALUD CARLOS III. Rio Hortega Grant CM19/00254Ministerio de Ciencia e Innovación (Instituto de 391 Salud Carlos III, ISCIII) and co-funded by The ERDF "A way to make Europe" FI19/00092Ministerio de Ciencia e Innovación (Instituto de 391 Salud Carlos III, ISCIII) and co-funded by The ERDF "A way to make Europe" FI20/00090Ministerio de Economía y Competitividad (Instituto de Salud Carlos III) PI18/0371Ministerio de Economía y Competitividad (Instituto de Salud Carlos III) PI19/00096RED DE ENFERMEDADES INFLAMATORIAS - RICORS RD21/0002/0027RICORS and Ministerio de Ciencia e Innovación (Instituto de Salud Carlos III, ISCIII), co-funded by European Regional Development Fund (ERDF) "A way to make Europe"; and co-financed by the Community of Madrid (CAM) through the COVID 2019 Aid RD21/0002/0004Universidad Autónoma de Madrid Margarita Salas
6 · The paper itself

Abstract

The characteristics of the host are crucial in the final outcome of COVID-19. Herein, the influence of genetic and clinical variants in COVID-19 severity was investigated in a total of 1350 patients. Twenty-one single nucleotide polymorphisms of genes involved in SARS-CoV-2 sensing as Toll-like-Receptor 7, antiviral immunity as the type I interferon signalling pathway (TYK2, STAT1, STAT4, OAS1, SOCS) and the vasoactive intestinal peptide and its receptors (VIP/VIPR1,2) were studied. To analyse the association between polymorphisms and severity, a model adjusted by age, sex and different comorbidities was generated by ordinal logistic regression. The genotypes rs8108236-AA (OR 0.12 [95% CI 0.02-0.53]; p = 0.007) and rs280519-AG (OR 0.74 [95% CI 0.56-0.99]; p = 0.03) in TYK2, and rs688136-CC (OR 0.7 [95% CI 0.5-0.99]; p = 0.046) in VIP, were associated with lower severity; in contrast, rs3853839-GG in TLR7 (OR 1.44 [95% CI 1.07-1.94]; p = 0.016), rs280500-AG (OR 1.33 [95% CI 0.97-1.82]; p = 0.078) in TYK2 and rs1131454-AA in OAS1 (OR 1.29 [95% CI 0.95-1.75]; p = 0.110) were associated with higher severity. Therefore, these variants could influence the risk of severe COVID-19.

Indexed as

COVID-19Polymorphism, Single NucleotideSARS-CoV-2Severity of Illness Index2',5'-Oligoadenylate SynthetaseAdultAgedFemaleGenetic Predisposition to DiseaseGenotypeHumansMaleMiddle AgedToll-Like Receptor 7TYK2 Kinase2',5'-Oligoadenylate SynthetaseOAS1 protein, humanTLR7 protein, humanToll-Like Receptor 7TYK2 KinaseTYK2 protein, human

Identifiers

PMID39237611
PMCPMC11377536

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.