Evidence map›Paper›PMID 39242815›Full record

ArticleNature microbiology2024

Mycobacterium tuberculosis virulence lipid PDIM inhibits autophagy in mice.

Ekansh Mittal, G V R Krishna Prasad, Sandeep Upadhyay, Jully Sadadiwala, Andrew J Olive, Guozhe Yang, Christopher M Sassetti, Jennifer A Philips

Abstract read
In one paragraph

Article in Nature microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Protein kinase F regulates the virulence ofInfection and immunity · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. HowVaccines · 2026
    Review
  6. Review
  7. Article
  8. Review
  9. CRISPRi-mediated silencing of the ABC transporterFrontiers in microbiology · 2026
    Article
  10. Effect of PKM2 onFrontiers in cellular and infection microbiology · 2026
    Article
  11. Protein kinase F regulates the virulence ofbioRxiv : the preprint server for biology · 2025
    Article
  12. Review
  13. Control of antigen presentation on MHC-I by a bacterial secretion system.bioRxiv : the preprint server for biology · 2025
    Article
  14. Article
  15. ATG16L1 controls mammalian vacuolar proton ATPase.The Journal of cell biology · 2025
    Article
  16. Article
  17. SMURF2 inhibits autophagic control ofbioRxiv : the preprint server for biology · 2025
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ekansh MittalDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St Louis, MO, USA. emittal@wustl.edu.ORCID http://orcid.org/0000-0001-9034-033X
G V R Krishna PrasadDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0003-2698-4952
Sandeep UpadhyayDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St Louis, MO, USA.
Jully SadadiwalaDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St Louis, MO, USA.
Andrew J OliveDepartment of Microbiology and Physiological Systems, UMass Chan Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0003-3441-3113
Guozhe YangDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St Louis, MO, USA.
Christopher M SassettiDepartment of Microbiology and Physiological Systems, UMass Chan Medical School, Worcester, MA, USA.
Jennifer A PhilipsDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St Louis, MO, USA. philips.j.a@wustl.edu.ORCID http://orcid.org/0000-0002-9476-0240

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
Systems Genetics of TuberculosisP01AI132130 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BEHAR, SAMUEL M · 2017 to 2021
$11.2M
Mechanisms of Innate Immune Evasion by Mycobacterium TuberculosisR01AI130454 · NIAID · WASHINGTON UNIVERSITY · PI JENNIFER A PHILIPS · 2017 to 2026
$5.9M
THE ROLE OF ESCRT IN MACROPHAGE RESISTANCE TO MYCOBACTERIAR01AI087682 · NIAID · WASHINGTON UNIVERSITY · PI PHILIPS, JENNIFER A · 2011 to 2022
$4.9M
NCI NIH HHS P30 CA091842NIAID NIH HHS P01 AI132130NIAID NIH HHS R01 AI087682NIAID NIH HHS R01 AI130454U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI087682U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI130454U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI132130
6 · The paper itself

Abstract

Mycobacterium tuberculosis (Mtb) infects several lung macrophage populations, which have distinct abilities to restrict Mtb. What enables Mtb survival in certain macrophage populations is not well understood. Here we used transposon sequencing analysis of Mtb in wild-type and autophagy-deficient mouse macrophages lacking ATG5 or ATG7, and found that Mtb genes involved in phthiocerol dimycocerosate (PDIM) virulence lipid synthesis confer resistance to autophagy. Using ppsD mutant Mtb, we found that PDIM inhibits LC3-associated phagocytosis (LAP) by inhibiting phagosome recruitment of NADPH oxidase. In mice, PDIM protected Mtb from LAP and classical autophagy. During acute infection, PDIM was dispensable for Mtb survival in alveolar macrophages but required for survival in non-alveolar macrophages in an autophagy-dependent manner. During chronic infection, autophagy-deficient mice succumbed to infection with PDIM-deficient Mtb, with impairments in B-cell accumulation in lymphoid follicles. These findings demonstrate that PDIM contributes to Mtb virulence and immune evasion, revealing a contributory role for autophagy in B-cell responses.

Indexed as

AutophagyAutophagy-Related Protein 7LipidsMacrophagesMycobacterium tuberculosisTuberculosisAnimalsAutophagy-Related Protein 5Immune EvasionMacrophages, AlveolarMiceMice, Inbred C57BLNADPH OxidasesPhagocytosisPhagosomesVirulenceAtg5 protein, mouseAtg7 protein, mouseAutophagy-Related Protein 5Autophagy-Related Protein 7LipidsNADPH Oxidasesphthiocerol dimycocerosateVirulence Factors

Identifiers

PMID39242815
PMCPMC12097147

What Socratic holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.