Evidence map›Paper›PMID 39250076›Full record

ArticleGigaScience2024

Web of venom: exploration of big data resources in animal toxin research.

Giulia Zancolli, Björn Marcus von Reumont, Gregor Anderluh, Figen Caliskan, Maria Luisa Chiusano, Jacob Fröhlich, Evroula Hapeshi, Benjamin-Florian Hempel, Maria P Ikonomopoulou, Florence Jungo and 11 more

Abstract read
In one paragraph

Article in GigaScience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Giulia ZancolliDepartment of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.ORCID 0000-0003-3060-2507
Björn Marcus von ReumontGoethe University Frankfurt, Faculty of Biological Sciences, 60438 Frankfurt, Germany.ORCID 0000-0002-7462-8226
Gregor AnderluhDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, 1000 Ljubljana, Slovenia.ORCID 0000-0002-9916-8465
Figen CaliskanDepartment of Biology, Faculty of Science, Eskisehir Osmangazi University, 26040 Eskişehir, Turkey.ORCID 0000-0001-5241-7770
Maria Luisa ChiusanoDepartment of Agricultural Sciences, University Federico II of Naples, 80055 Portici, Naples, Italy.ORCID 0000-0002-6296-7132
Jacob FröhlichVeterinary Center for Resistance Research (TZR), Freie Universität Berlin, 14163 Berlin, Germany.ORCID 0009-0001-5629-0882
Evroula HapeshiDepartment of Health Sciences, School of Life and Health Sciences, University of Nicosia, 1700 Nicosia, Cyprus.ORCID 0000-0002-2785-145X
Benjamin-Florian HempelVeterinary Center for Resistance Research (TZR), Freie Universität Berlin, 14163 Berlin, Germany.ORCID 0000-0002-1998-4033
Maria P IkonomopoulouMadrid Institute of Advanced Studies in Food, Precision Nutrition & Aging Program, 28049 Madrid, Spain.ORCID 0000-0001-7739-080X
Florence JungoSIB Swiss Institute of Bioinformatics, Swiss-Prot Group, 1211 Geneva, Switzerland.ORCID 0000-0002-7456-8390
Pascale MarchotLaboratory Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille University, Centre National de la Recherche Scientifique, Faculté des Sciences, Campus Luminy, 13288 Marseille, France.ORCID 0000-0003-0630-0541
Tarcisio Mendes de FariasDepartment of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.ORCID 0000-0002-3175-5372
Maria Vittoria ModicaDepartment of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, 00198 Rome, Italy.ORCID 0000-0003-2532-6763
Yehu MoranDepartment of Ecology, Evolution and Behavior, Alexander Silberman Institute of Life Sciences, Faculty of Science, The Hebrew University of Jerusalem, 9190401 Jerusalem, Israel.ORCID 0000-0001-9928-9294
Ayse NalbantsoyEngineering Faculty, Bioengineering Department, Ege University, 35100 Bornova-Izmir, Turkey.ORCID 0000-0002-3852-1974
Jan ProcházkaLaboratory of Transgenic Models of Diseases, Institute of Molecular Genetics of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic.ORCID 0000-0003-4675-8995
Andrea TaralloInstitute of Research on Terrestrial Ecosystems (IRET), National Research Council (CNR), 73100 Lecce, Italy.ORCID 0000-0002-2749-8588
Fiorella TonelloNeuroscience Institute, National Research Council (CNR), 35131 Padua, Italy.ORCID 0000-0001-8935-8938
Rui VitorinoDepartment of Medical Sciences, iBiMED, University of Aveiro, 3810-193 Aveiro, Portugal.ORCID 0000-0003-3636-5805
Mark Lawrence ZammitDepartment of Clinical Pharmacology & Therapeutics, Faculty of Medicine & Surgery, University of Malta, 2090 Msida, Malta.ORCID 0000-0001-9202-1797
Agostinho AntunesCIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, 4450-208 Porto, Portugal.ORCID 0000-0002-1328-1732

Funding

European Cooperation in Science and TechnologyFundação para a Ciência e a Tecnologia
6 · The paper itself

Abstract

Research on animal venoms and their components spans multiple disciplines, including biology, biochemistry, bioinformatics, pharmacology, medicine, and more. Manipulating and analyzing the diverse array of data required for venom research can be challenging, and relevant tools and resources are often dispersed across different online platforms, making them less accessible to nonexperts. In this article, we address the multifaceted needs of the scientific community involved in venom and toxin-related research by identifying and discussing web resources, databases, and tools commonly used in this field. We have compiled these resources into a comprehensive table available on the VenomZone website (https://venomzone.expasy.org/10897). Furthermore, we highlight the challenges currently faced by researchers in accessing and using these resources and emphasize the importance of community-driven interdisciplinary approaches. We conclude by underscoring the significance of enhancing standards, promoting interoperability, and encouraging data and method sharing within the venom research community.

Indexed as

Big DataComputational BiologyInternetVenomsAnimalsDatabases, FactualVenomsantivenomdrug discoverygenomicsmachine learningpeptidomicsproteomicstoxin databasestranscriptomicsvenom resources

Identifiers

PMID39250076
PMCPMC11382406

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.