Evidence map›Paper›PMID 39264806›Full record

ArticleSTAR protocols2024

Protocol to characterize mouse intestinal epithelial cell lineage using Opal multiplex immunofluorescence.

Anxo Martinez-Ordoñez, Hiroto Kinoshita, Tania Cid-Diaz, Angeles Duran, Marta Osrodek, Maria T Diaz-Meco, Jorge Moscat

Abstract read
In one paragraph

Article in STAR protocols, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anxo Martinez-OrdoñezDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA. Electronic address: amo4002@med.cornell.edu.
Hiroto KinoshitaDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA.
Tania Cid-DiazDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA.
Angeles DuranDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA.
Marta OsrodekDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA.
Maria T Diaz-MecoDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA.
Jorge MoscatDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA. Electronic address: jom4010@med.cornell.edu.

Funding

Interferon regulation by NBR1-driven chaperone-mediated autophagy in stellate cells in liver cancerR01CA265892 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Jorge Moscat · 2022 to 2026
$2.4M
Molecular mechanisms driving mesenchymal colorectal cancerR01CA250025 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOSCAT, JORGE · 2021 to 2025
$2.2M
Cholesterol metabolism in mesenchymal colorectal cancerR01CA275846 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Jorge Moscat · 2023 to 2026
$2.2M
Novel Pathways in the Control of Lineage Plasticity in Neuroendocrine Prostate CancerR01CA246765 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI DIAZ MECO CONDE, MARIA TERESA · 2020 to 2024
$2.1M
Dissecting the in vivo stromal metabolic and inflammatory crosstalk in colorectal cancerR50CA265332 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Maria Angeles Duran Molina · 2022 to 2026
$869k
NCI NIH HHS R01 CA246765NCI NIH HHS R01 CA250025NCI NIH HHS R01 CA265892NCI NIH HHS R01 CA275846NCI NIH HHS R50 CA265332
6 · The paper itself

Abstract

Applying Opal multiplex immunofluorescence (OMI) to characterize intestinal tissues of genetically engineered mouse models provides an excellent tool for studying complex processes. However, detecting appropriate signals from multiple target molecules is challenging. Here, we present a protocol to characterize mouse intestinal epithelial cell lineage using OMI. We describe steps for processing small intestine and colonic mouse tissues and designing and optimizing panels for OMI in mouse intestinal tissues. We then detail procedures for performing a quantitative evaluation of acquired images. For complete details on the use and execution of this protocol, please refer to Kinoshita et al.

Indexed as

Cell LineageEpithelial CellsFluorescent Antibody TechniqueIntestinal MucosaAnimalsColonIntestine, SmallMiceCancerIn Situ HybridizationMicroscopyModel OrganismsMolecular BiologyMolecular/Chemical ProbesStem Cells

Identifiers

PMID39264806
PMCPMC11422768

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.