Evidence map›Paper›PMID 39264994›Full record

ArticleScience (New York, N.Y.)2024

Transcripts of repetitive DNA elements signal to block phagocytosis of hematopoietic stem cells.

Cecilia Pessoa Rodrigues, Joseph M Collins, Song Yang, Catherine Martinez, Ji Wook Kim, Chhiring Lama, Anna S Nam, Clemens Alt, Charles Lin, Leonard I Zon

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Macrophages release neuraminidase and cleaved calreticulin for programmed cell removal.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cecilia Pessoa RodriguesHoward Hughes Medical Institute, Boston Children's Hospital Boston, MA, USA.ORCID 0000-0001-8617-6565
Joseph M CollinsHoward Hughes Medical Institute, Boston Children's Hospital Boston, MA, USA.ORCID 0000-0002-5487-4294
Song YangHoward Hughes Medical Institute, Boston Children's Hospital Boston, MA, USA.ORCID 0000-0002-3064-3141
Catherine MartinezHarvard Stem Cell Institute, Stem Cell and Regenerative Biology Department, Harvard University, Cambridge, MA, USA.ORCID 0009-0004-9391-7834
Ji Wook KimHoward Hughes Medical Institute, Boston Children's Hospital Boston, MA, USA.ORCID 0000-0002-9658-4703
Chhiring LamaDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.
Anna S NamDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0003-4192-8916
Clemens AltWellman Center for Photomedicine, Mass General Research Institute, Boston, MA, USA.
Charles LinWellman Center for Photomedicine, Mass General Research Institute, Boston, MA, USA.ORCID 0000-0002-7450-627X
Leonard I ZonHoward Hughes Medical Institute, Boston Children's Hospital Boston, MA, USA.ORCID 0000-0003-0860-926X

Funding

TRANSCRIPTION FACTOR GATA-1 IN TERMINAL ERYTHROID DEVELOPMENTP01HL032262 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1985 to 2021
$38.9M
Transcriptional and epigenetic heterogeneity of stem/progenitor cellsP01HL131477 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Jason Daniel Buenrostro · 2017 to 2026
$24.6M
PATHOPHYSIOLOGY OF HUMAN BLOOD CELLST32HL007574 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI Daniel Evan Bauer · 1985 to 2026
$18.4M
Customized stem cells for clinical application in blood disordersR24DK092760 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI COLLINS, JAMES J, DALEY, GEORGE Q · 2011 to 2018
$10.7M
Stem cells for therapeutics discovery in genetic blood disordersU01HL134812 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI DALEY, GEORGE Q, LIPTON, JEFFREY M · 2016 to 2022
$8.3M
Molecular Circuits in the Hematopoietic Stem Cell NicheRC2DK120535 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI COLLINS, JAMES J, DALEY, GEORGE Q · 2020 to 2024
$8.2M
A Community Zebrafish Resource for Modeling GWAS BiologyR24OD017870 · OD · BRIGHAM AND WOMEN'S HOSPITAL · PI GOESSLING, WOLFRAM, MACRAE, CALUM A. · 2014 to 2021
$6.3M
Project-002U54DK110805 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI ORKIN, STUART H, ZON, LEONARD IRA · 2016 to 2020
$5.9M
Elucidating Mechanisms of Therapy-Resistance to Interferon-alfa in Myeloproliferative Neoplasm Stem Cells - Diversity SupplementR01HL167139 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Ann Mullally, Seung Ha Nam · 2023 to 2026
$2.8M
Defining malignant hematopoiesis via single-cell multi-omics - DP5 diversity supplement applicationDP5OD029619 · OD · WEILL MEDICAL COLL OF CORNELL UNIV · PI NAM, SEUNG HA · 2020 to 2024
$2.3M
Transcriptional response to signaling during hematopoiesisR01HL144780 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI ZON, LEONARD IRA · 2019 to 2022
$2.1M
Howard Hughes Medical InstituteNHLBI NIH HHS P01 HL032262NHLBI NIH HHS P01 HL131477NHLBI NIH HHS R01 HL144780NHLBI NIH HHS R01 HL167139NHLBI NIH HHS T32 HL007574NHLBI NIH HHS U01 HL134812NIDDK NIH HHS R24 DK092760NIDDK NIH HHS RC2 DK120535NIDDK NIH HHS U54 DK110805NIH HHS DP5 OD029619NIH HHS R24 OD017870
6 · The paper itself

Abstract

Macrophages maintain hematopoietic stem cell (HSC) quality by assessing cell surface Calreticulin (Calr), an "eat-me" signal induced by reactive oxygen species (ROS). Using zebrafish genetics, we identified Beta-2-microglobulin (B2m) as a crucial "don't eat-me" signal on blood stem cells. A chemical screen revealed inducers of surface Calr that promoted HSC proliferation without triggering ROS or macrophage clearance. Whole-genome CRISPR-Cas9 screening showed that Toll-like receptor 3 (Tlr3) signaling regulated

Indexed as

beta 2-MicroglobulinCalreticulinHematopoietic Stem CellsMacrophagesPhagocytosisToll-Like Receptor 3AnimalsCell ProliferationCRISPR-Cas SystemsReactive Oxygen SpeciesRepetitive Sequences, Nucleic AcidSignal TransductionZebrafishZebrafish Proteinsbeta 2-MicroglobulinCalreticulinReactive Oxygen SpeciesToll-Like Receptor 3Zebrafish Proteins

Identifiers

PMID39264994
PMCPMC12012832

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.