Evidence map›Paper›PMID 39265028›Full record

ArticleScience (New York, N.Y.)2024

Autoregulated splicing of

Timofey A Karginov, Antoine Ménoret, Nathan K Leclair, Andrew G Harrison, Karthik Chandiran, Jenny E Suarez-Ramirez, Marina Yurieva, Keaton Karlinsey, Penghua Wang, Rachel J O'Neill and 6 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Ultra-Conserved Poison Exons Enable Rapid and Safe Splicing Factor Gene Expression Switches: A Hypothesis.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Timofey A KarginovDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0001-7713-1832
Antoine MénoretDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0002-1559-7159
Nathan K LeclairDepartment of Genetics and Genome Sciences, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0002-0401-2549
Andrew G HarrisonDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0002-0224-8937
Karthik ChandiranDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0003-2118-7946
Jenny E Suarez-RamirezDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0009-0004-7752-1848
Marina YurievaThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06030, USA.ORCID 0000-0002-5761-0382
Keaton KarlinseyDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0001-9085-4533
Penghua WangDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0002-7332-1871
Rachel J O'NeillDepartment of Genetics and Genome Sciences, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0002-1525-6821
Patrick A MurphyCenter for Vascular Biology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0002-2956-1042
Adam J AdlerDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.
Linda S CauleyDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.
Olga AnczukówDepartment of Genetics and Genome Sciences, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0003-0516-2677
Beiyan ZhouDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0003-0638-2428
Anthony T VellaDepartment of Immunology, School of Medicine, University of Connecticut, UConn Health, Farmington, CT 06030, USA.ORCID 0000-0003-4600-5504

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI Paul Robson · 1985 to 2026
$61.9M
RNA-Binding Proteins in the Regulation of Vascular Inflammation and ImmunityR01HL150362 · NHLBI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI MURPHY, PATRICK ANDRIES · 2021 to 2025
$2.7M
MYC-regulated RNA Binding Protein Networks and Spliced Isoforms Driving CancerR01CA248317 · NCI · JACKSON LABORATORY · PI ANCZUKOW-CAMARDA, OLGA · 2021 to 2025
$2.7M
Mechanisms of post-transcriptional regulation of splicing factorsR01GM138541 · NIGMS · JACKSON LABORATORY · PI ANCZUKOW-CAMARDA, OLGA · 2020 to 2024
$2.1M
MiR-150 regulated adiose tissue B cells in obesityR01DK121805 · NIDDK · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI VELLA, ANTHONY T, ZHOU, BEIYAN · 2020 to 2024
$2.0M
The Role of Retroelements in Centromere FunctionR01GM123312 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI O'NEILL, RACHEL · 2019 to 2022
$1.9M
ASCVD risk assessment in T2DM facilitated by novel computational immunology programsR01HL172239 · NHLBI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Anthony T Vella, Beiyan Zhou · 2024 to 2026
$1.6M
Test if antitumor T cells use a putative super-enhancer in the Il1rl2-Il1rl1 intergenic region to form "innate-like" responses to cytokinesR21AI139891 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI ADLER, ADAM J, VELLA, ANTHONY T · 2018 to 2019
$439k
Predicting Cardiovascular Outcomes Using Diabetes-Induced Transcriptomic NetworksF30HL168980 · NHLBI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Keaton Karlinsey · 2023 to 2026
$208k
American Heart Association-American Stroke Association 23PRE1023195NCI NIH HHS P30 CA034196NCI NIH HHS R01 CA248317NHLBI NIH HHS F30 HL168980NHLBI NIH HHS R01 HL150362NHLBI NIH HHS R01 HL172239NIAID NIH HHS R21 AI139891NIDDK NIH HHS R01 DK121805NIGMS NIH HHS R01 GM123312NIGMS NIH HHS R01 GM138541
6 · The paper itself

Abstract

T cell receptor (TCR) sensitivity to peptide-major histocompatibility complex (MHC) dictates T cell fate. Canonical models of TCR sensitivity cannot be fully explained by transcriptional regulation. In this work, we identify a posttranscriptional regulatory mechanism of TCR sensitivity that guides alternative splicing of TCR signaling transcripts through an evolutionarily ultraconserved poison exon (PE) in the RNA-binding protein (RBP) TRA2β in mouse and human.

Indexed as

Alternative SplicingExonsReceptors, Antigen, T-CellSerine-Arginine Splicing FactorsAnimalsCell SurvivalConserved SequenceHumansMiceNerve Tissue ProteinsRNA-Binding ProteinsT-LymphocytesNerve Tissue ProteinsReceptors, Antigen, T-CellRNA-Binding ProteinsSerine-Arginine Splicing FactorsTRA2B protein, humanTra2b protein, mouse

Identifiers

PMID39265028
PMCPMC11697694

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.