Evidence map›Paper›PMID 39273601›Full record

ArticleInternational journal of molecular sciences2024

Correlation of Solvent Interaction Analysis Signatures with Thermodynamic Properties and In Silico Calculations of the Structural Effects of Point Mutations in Two Proteins.

Amber R Titus, Pedro P Madeira, Vladimir N Uversky, Boris Y Zaslavsky

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Amber R TitusCleveland Diagnostics, 3615 Superior Ave., Cleveland, OH 44114, USA.ORCID 0000-0002-9670-2634
Pedro P MadeiraCleveland Diagnostics, 3615 Superior Ave., Cleveland, OH 44114, USA.
Vladimir N UverskyDepartment of Molecular Medicine and Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL 33612, USA.ORCID 0000-0002-4037-5857
Boris Y ZaslavskyCleveland Diagnostics, 3615 Superior Ave., Cleveland, OH 44114, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The partition behavior of single and double-point mutants of bacteriophage T4 lysozyme (T4 lysozyme) and staphylococcal nuclease A was examined in different aqueous two-phase systems (ATPSs) and studied by Solvent Interaction Analysis (SIA). Additionally, the solvent accessible surface area (SASA) of modeled mutants of both proteins was calculated. The in silico calculations and the in vitro analyses of the staphylococcal nuclease and T4 lysozyme mutants correlate, indicating that the partition analysis in ATPSs provides a valid descriptor (SIA signature) covering various protein features, such as structure, structural dynamics, and conformational stability.

Indexed as

Bacteriophage T4Micrococcal NucleaseMuramidasePoint MutationSolventsThermodynamicsComputer SimulationModels, MolecularProtein ConformationViral ProteinsMicrococcal NucleaseMuramidaseSolventsViral Proteinsaqueous two-phase systembacteriophage T4 lysozymeconformational stabilityprotein partitioningsolvent interaction analysisstaphylococcal nuclease Astructural signature

Identifiers

PMID39273601
PMCPMC11394797

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.