Evidence map›Paper›PMID 39280609›Full record

ArticleiScience2024

Single-cell RNA-seq reveals a resolving immune phenotype in the oral mucosa.

Paul Cantalupo, Alex Diacou, Sangmin Park, Vishal Soman, Jiamiao Chen, Deshawna Glenn, Uma Chandran, Daniel Clark

Abstract read
In one paragraph

Article in iScience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. [Comparative analysis of microbial communities in different oral ecological niches of preschool children].Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2026
    Article
  2. Review
  3. Introduction to Oral Immunity.Advances in experimental medicine and biology · 2026
    Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Paul CantalupoDepartment of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Pittsburgh, PA 15206-3701, USA.
Alex DiacouCenter for Craniofacial Regeneration, University of Pittsburgh School of Dental Medicine, 335 Sutherland Dr., Pittsburgh, PA 15213, USA.
Sangmin ParkCenter for Craniofacial Regeneration, University of Pittsburgh School of Dental Medicine, 335 Sutherland Dr., Pittsburgh, PA 15213, USA.
Vishal SomanDepartment of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Pittsburgh, PA 15206-3701, USA.
Jiamiao ChenCenter for Craniofacial Regeneration, University of Pittsburgh School of Dental Medicine, 335 Sutherland Dr., Pittsburgh, PA 15213, USA.
Deshawna GlennCenter for Craniofacial Regeneration, University of Pittsburgh School of Dental Medicine, 335 Sutherland Dr., Pittsburgh, PA 15213, USA.
Uma ChandranDepartment of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Pittsburgh, PA 15206-3701, USA.
Daniel ClarkCenter for Craniofacial Regeneration, University of Pittsburgh School of Dental Medicine, 335 Sutherland Dr., Pittsburgh, PA 15213, USA.

Funding

The impact of the aging immune system on periodontal diseaseK08DE029505 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CLARK, DANIEL R. · 2020 to 2024
$913k
NIDCR NIH HHS K08 DE029505
6 · The paper itself

Abstract

The oral mucosa is the interface between the host immune response and the oral microbiota. In periodontal disease, the microbial plaque elicits a tissue-destructive immune response. Removal of the microbial stimulus initiates active resolution of inflammatory. Here, we use single-cell RNA-sequencing (scRNA-seq) to characterize the immune response within the oral mucosa across three distinct conditions of periodontal health, disease, and resolution in mice. We report gene expression shifts across the three conditions are driven by macrophage and neutrophils and identify a unique gene signature that characterizes resolution of disease. Macrophage subgroups are identified that demonstrate differential expansion across conditions, including a subgroup that expands during resolution with an immunoregulatory gene signature and enriched for surface marker Cd74. We validate expansion of this subgroup during resolution via flow cytometry. This work presents a robust single-cell dataset of immunological changes in the oral mucosa and identifies a resolution-associated macrophage phenotype in mucosal immunity.

Indexed as

BioinformaticsImmunologySequence analysis

Identifiers

PMID39280609
PMCPMC11399601

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.