Evidence map›Paper›PMID 39294263›Full record

ArticleNature plants2024

Highly sensitive site-specific SUMOylation proteomics in Arabidopsis.

Tian Sang, Yaping Xu, Guochen Qin, Shasha Zhao, Chuan-Chi Hsu, Pengcheng Wang

Abstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. SIZ1-mediated SUMOylation of HAT1 enhances plant thermotolerance in Arabidopsis.The Plant journal : for cell and molecular biology · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tian SangInstitute of Advanced Biotechnology and School of Medicine, Southern University of Science and Technology, Shenzhen, China.ORCID http://orcid.org/0000-0002-4694-3819
Yaping XuShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.
Guochen QinPeking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences at Weifang, Weifang, China.ORCID http://orcid.org/0000-0002-2048-8571
Shasha ZhaoInstitute of Advanced Biotechnology and School of Medicine, Southern University of Science and Technology, Shenzhen, China.
Chuan-Chi HsuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.ORCID http://orcid.org/0000-0002-7100-1401
Pengcheng WangInstitute of Advanced Biotechnology and School of Medicine, Southern University of Science and Technology, Shenzhen, China. wangpc@sustech.edu.cn.ORCID http://orcid.org/0000-0001-6043-4132

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SUMOylation-the attachment of a small ubiquitin-like modifier (SUMO) to target proteins-plays roles in controlling plant growth, nutrient signalling and stress responses. SUMOylation studies in plants are scarce because identifying SUMOylated proteins and their sites is challenging. To date, only around 80 SUMOylation sites have been identified. Here we introduce lysine-null SUMO1 into the Arabidopsis sumo1 sumo2 mutant and establish a two-step lysine-null SUMO enrichment method. We identified a site-specific SUMOylome comprising over 2,200 SUMOylation sites from 1,300 putative acceptors that function in numerous nuclear processes. SUMOylation marks occur on several motifs, differing from the canonical ψKxE motif in distant eukaryotes. Quantitative comparisons demonstrate that SUMOylation predominantly enhances the stability of SUMO1 acceptors. Our study delivers a highly sensitive and efficient method for site-specific SUMOylome studies and provides a comprehensive catalogue of Arabidopsis SUMOylation, serving as a valuable resource with which to further explore how SUMOylation regulates protein function.

Indexed as

ArabidopsisArabidopsis ProteinsProteomicsSumoylationSmall Ubiquitin-Related Modifier ProteinsArabidopsis ProteinsSmall Ubiquitin-Related Modifier Proteins

Identifiers

PMID39294263

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.