Evidence map›Paper›PMID 39296018›Full record

ArticleHeliyon2024

A comprehensive learning based swarm optimization approach for feature selection in gene expression data.

Subha Easwaran, Jothi Prakash Venugopal, Arul Antran Vijay Subramanian, Gopikrishnan Sundaram, Beebi Naseeba

Abstract read
In one paragraph

Article in Heliyon, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Subha EaswaranDepartment of Science and Humanities, Karpagam College of Engineering, Myleripalayam Village, Coimbatore-641032, Tamilnadu, India.
Jothi Prakash VenugopalDepartment of Information Technology, Karpagam College of Engineering, Myleripalayam Village, Coimbatore-641032, Tamilnadu, India.
Arul Antran Vijay SubramanianDepartment of Computer Science and Engineering, Karpagam College of Engineering, Myleripalayam Village, Coimbatore-641032, Tamilnadu, India.
Gopikrishnan SundaramSchool of Computer Science and Engineering, VIT-AP University, Amaravathi-522241, Andhra Pradesh, India.
Beebi NaseebaSchool of Computer Science and Engineering, VIT-AP University, Amaravathi-522241, Andhra Pradesh, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene expression data analysis is challenging due to the high dimensionality and complexity of the data. Feature selection, which identifies relevant genes, is a common preprocessing step. We propose a Comprehensive Learning-Based Swarm Optimization (CLBSO) approach for feature selection in gene expression data. CLBSO leverages the strengths of ants and grasshoppers to efficiently explore the high-dimensional search space. Ants perform local search and leave pheromone trails to guide the swarm, while grasshoppers use their ability to jump long distances to explore new regions and avoid local optima. The proposed approach was evaluated on several publicly available gene expression datasets and compared with state-of-the-art feature selection methods. CLBSO achieved an average accuracy improvement of 15% over the original high-dimensional data and outperformed other feature selection methods by up to 10%. For instance, in the Pancreatic cancer dataset, CLBSO achieved 97.2% accuracy, significantly higher than XGBoost-MOGA's 84.0%. Convergence analysis showed CLBSO required fewer iterations to reach optimal solutions. Statistical analysis confirmed significant performance improvements, and stability analysis demonstrated consistent gene subset selection across different runs. These findings highlight the robustness and efficacy of CLBSO in handling complex gene expression datasets, making it a valuable tool for enhancing classification tasks in bioinformatics.

Indexed as

Cancer classificationComprehensive learningFeature selectionGene expressionGene selectionSwarm intelligence

Identifiers

PMID39296018
PMCPMC11408137

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.