Evidence map›Paper›PMID 39297502›Full record

ArticleeLife2024

Exploring the role of macromolecular crowding and TNFR1 in cell volume control.

Parijat Biswas, Priyanka Roy, Subhamoy Jana, Dipanjan Ray, Jibitesh Das, Bipasa Chaudhuri, Ridita Ray Basunia, Bidisha Sinha, Deepak Kumar Sinha

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Parijat BiswasSchool of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, India.ORCID https://orcid.org/0000-0003-2235-2384
Priyanka Roy *School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, India.ORCID https://orcid.org/0000-0002-4197-8211
Subhamoy Jana *School of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, India.
Dipanjan RaySchool of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, India.ORCID https://orcid.org/0000-0002-2819-3284
Jibitesh DasDepartment of Biological Sciences, Indian Institute of Science Education and Research Kolkata, Kolkata, India.ORCID https://orcid.org/0000-0003-3611-5902
Bipasa ChaudhuriSchool of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, India.ORCID https://orcid.org/0009-0001-3652-2922
Ridita Ray BasuniaSchool of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, India.
Bidisha SinhaDepartment of Biological Sciences, Indian Institute of Science Education and Research Kolkata, Kolkata, India.ORCID https://orcid.org/0000-0001-6449-8205
Deepak Kumar SinhaSchool of Biological Sciences, Indian Association for the Cultivation of Science, Kolkata, India.ORCID https://orcid.org/0000-0002-8303-5035

Funding

Department of Biotechnology, Ministry of Science and Technology, India BT/PR6995/BRB/10/1140/2012Department of Science and Technology, Ministry of Science and Technology, India CRG/2022/005356Wellcome TrustWellcome Trust DBt India Alliance IA/I/13/1/500885Wellcome Trust DBT India Alliance IA/I/13/1/500885
6 · The paper itself

Abstract

The excessive cosolute densities in the intracellular fluid create a physicochemical condition called macromolecular crowding (MMC). Intracellular MMC entropically maintains the biochemical thermodynamic equilibria by favoring associative reactions while hindering transport processes. Rapid cell volume shrinkage during extracellular hypertonicity elevates the MMC and disrupts the equilibria, potentially ushering cell death. Consequently, cells actively counter the hypertonic stress through regulatory volume increase (RVI) and restore the MMC homeostasis. Here, we establish fluorescence anisotropy of EGFP as a reliable tool for studying cellular MMC and explore the spatiotemporal dynamics of MMC during cell volume instabilities under multiple conditions. Our studies reveal that the actin cytoskeleton enforces spatially varying MMC levels inside adhered cells. Within cell populations, MMC is uncorrelated with nuclear DNA content but anti-correlated with the cell spread area. Although different cell lines have statistically similar MMC distributions, their responses to extracellular hypertonicity vary. The intensity of the extracellular hypertonicity determines a cell's ability for RVI, which correlates with nuclear factor kappa beta (NFkB) activation. Pharmacological inhibition and knockdown experiments reveal that tumor necrosis factor receptor 1 (TNFR1) initiates the hypertonicity-induced NFkB signaling and RVI. At severe hypertonicities, the elevated MMC amplifies cytoplasmic microviscosity and hinders receptor interacting protein kinase 1 (RIPK1) recruitment at the TNFR1 complex, incapacitating the TNFR1-NFkB signaling and consequently, RVI. Together, our studies unveil the involvement of TNFR1-NFkB signaling in modulating RVI and demonstrate the pivotal role of MMC in determining cellular osmoadaptability.

Indexed as

Cell SizeReceptors, Tumor Necrosis Factor, Type ICell LineHumansMacromolecular SubstancesNF-kappa BSignal TransductionMacromolecular SubstancesNF-kappa BReceptors, Tumor Necrosis Factor, Type ITNFRSF1A protein, humancell biologycell volume regulationmacromolecular crowdingTNFR1

Identifiers

PMID39297502
PMCPMC11581439

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.