Evidence map›Paper›PMID 39300080›Full record

ArticleNature communications2024

PIP2 inhibits pore opening of the cyclic nucleotide-gated channel SthK.

Oliver Thon, Zhihan Wang, Philipp A M Schmidpeter, Crina M Nimigean

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Understanding Ion Channel Gating Mechanisms by Molecular Dynamics Simulations.Advances in experimental medicine and biology · 2026
    Review
  5. The Nanodisc System for Investigating Protein-Lipid Interactions.Methods in molecular biology (Clifton, N.J.) · 2026
    Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Oliver Thon *Department of Anesthesiology, Weill Cornell Medicine, 1300 York Avenue, New York, NY, USA.ORCID 0009-0001-1297-860X
Zhihan WangDepartment of Anesthesiology, Weill Cornell Medicine, 1300 York Avenue, New York, NY, USA.ORCID 0000-0001-7315-0841
Philipp A M Schmidpeter *Department of Anesthesiology, Weill Cornell Medicine, 1300 York Avenue, New York, NY, USA. philipp.schmidpeter@utsa.edu.ORCID 0000-0003-2871-9706
Crina M NimigeanDepartment of Anesthesiology, Weill Cornell Medicine, 1300 York Avenue, New York, NY, USA. crn2002@med.cornell.edu.ORCID 0000-0002-6254-4447

Funding

Structural dynamics in cyclic nucleotide-modulated channelsR01GM124451 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIMIGEAN, CRINA M · 2017 to 2024
$3.2M
Deutscher Akademischer Austauschdienst (German Academic Exchange Service) N/ANIGMS NIH HHS R01 GM124451U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM124451
6 · The paper itself

Abstract

The signaling lipid phosphatidylinositol-4,5-bisphosphate (PIP2) regulates many ion channels. It inhibits eukaryotic cyclic nucleotide-gated (CNG) channels while activating their relatives, the hyperpolarization-activated and cyclic nucleotide-modulated (HCN) channels. The prokaryotic SthK channel from Spirochaeta thermophila shares features with CNG and HCN channels and is an established model for this channel family. Here, we show SthK activity is inhibited by PIP2. A cryo-EM structure of SthK in nanodiscs reveals a PIP2-fitting density coordinated by arginine and lysine residues from the S4 helix and the C-linker, located between voltage-sensing and pore domains of adjacent subunits. Mutation of two arginine residues weakens PIP2 inhibition with the double mutant displaying insensitivity to PIP2. We propose that PIP2 inhibits SthK by gluing S4 and S6 together, stabilizing a resting channel conformation. The PIP2 binding site is partially conserved in CNG channels suggesting the possibility of a similar inhibition mechanism in the eukaryotic homologs.

Indexed as

Cryoelectron MicroscopyCyclic Nucleotide-Gated Cation ChannelsPhosphatidylinositol 4,5-DiphosphateSpirochaetaArginineBacterial ProteinsBinding SitesIon Channel GatingModels, MolecularMutationArginineBacterial ProteinsCyclic Nucleotide-Gated Cation ChannelsPhosphatidylinositol 4,5-Diphosphate

Identifiers

PMID39300080
PMCPMC11413322

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.