Evidence map›Paper›PMID 39302542›Full record

ArticleVirus genes2024

Effect of HDAC9-induced deacetylation of glycolysis-related GAPDH lysine 219 on rotavirus replication in rotavirus-infected Caco-2 cells.

Lijun Song, Peicheng Zhong, Runyu Yu, Yue Yuan, Yujing Zhou, Yupei Qian, Siyan Yang, Haosen Yi, Zhiyan Yang, Wenchang Zhao

Abstract read
In one paragraph

Article in Virus genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lijun SongSchool of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Peicheng Zhong *School of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Runyu YuSchool of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Yue YuanSchool of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Yujing ZhouSchool of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Yupei QianSchool of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Siyan YangSchool of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Haosen YiSchool of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Zhiyan YangSchool of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China.
Wenchang Zhao *School of Pharmacy, Guangdong Medical University, NO.1, Xincheng Road, Dongguan, 523808, Guangdong Province, China. zhaowenchang@126.com.

Funding

Discipline construction project of Guangdong Medical University No. 4SG22009GGuangdong Innovation Team Project for Regular Institutions of Higher Learning No.2022KCXTD011Key Project of Social Science and Technology Development of Dongguan No. 20185071521658National Natural Science Foundation of China No. 81973548 and No. 81473401Zhanjiang Science and Technology Planning Project No.2021B01139
6 · The paper itself

Abstract

Post-translational modifications (PTMs), as epigenetic modifications, are significant in the interaction between virus and its host. However, it is unclear whether rotavirus (RV) causes changes in both the host cell epigenetic protein modification and the regulatory mechanism of viral replication. Here, we analyzed the proteome of Caco-2 cells to determine if acetylation modification occurred within the cells after RV infection. We found that glyceraldehyde-3-phosphate dehydrogenase (GAPDH), a protein involved in glycolysis, was deacetylated at lysine 219 via histone deacetylase 9 (HDAC9) in 50 h after the RV infection. Remarkably, the deacetylation of GAPDH promoted RV replication. Finally, we found that glycolysis was alterable in Caco-2 cells by RV or the deacetylation of GAPDH lysine 219, using the Seahorse XF Glycolysis Stress Test. In conclusion, our results demonstrate for the first time that RV infection promoted deacetylation of GAPDH at lysine 219 in order to increase its own viral replication in Caco-2 cells.

Indexed as

GlycolysisHistone DeacetylasesLysineRotavirusVirus ReplicationAcetylationCaco-2 CellsGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)Glyceraldehyde-3-Phosphate DehydrogenasesHumansProtein Processing, Post-TranslationalRotavirus InfectionsGAPDH protein, humanGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)Glyceraldehyde-3-Phosphate DehydrogenasesHistone DeacetylasesLysineAcetylationGAPDHGlycolysisHDAC9Rotavirus

Identifiers

PMID39302542
PMCPMC11568057

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.