Evidence map›Paper›PMID 39304826›Full record

ArticleBMC genomics2024

SPLHRNMTF: robust orthogonal non-negative matrix tri-factorization with self-paced learning and dual hypergraph regularization for predicting miRNA-disease associations.

Dong Ouyang, Rui Miao, Juan Zeng, Xing Li, Ning Ai, Panke Wang, Jie Hou, Jinqiu Zheng

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dong OuyangSchool of Biomedical Engineering, Guangdong Medical University, Dongguan, 523808, China. ouyangdong@gdmu.edu.cn.
Rui MiaoBasic Teaching Department, Zhuhai Campus of Zunyi Medical University, Zhuhai, 519099, China.
Juan ZengSchool of Biomedical Engineering, Guangdong Medical University, Dongguan, 523808, China.
Xing LiSchool of Biomedical Engineering, Guangdong Medical University, Dongguan, 523808, China.
Ning AiThe college of Mechanical and Electrical Engineering, Shihezi University, Shihezi, 832003, China.
Panke WangSchool of Biomedical Engineering, Guangdong Medical University, Dongguan, 523808, China.
Jie HouSchool of Biomedical Engineering, Guangdong Medical University, Dongguan, 523808, China.
Jinqiu ZhengSchool of Biomedical Engineering, Guangdong Medical University, Dongguan, 523808, China.

Funding

Dongguan Science and Technology Commissioner Fund, China No. 2DK23001Guangdong Medical Science and Technology Research Fund No. A2024169Guangdong Medical University Youth Scientific Research Cultivation Fund No. GDMUQ2023008
6 · The paper itself

Abstract

MicroRNAs (miRNAs) have been demonstrated to be closely related to human diseases. Studying the potential associations between miRNAs and diseases contributes to our understanding of disease pathogenic mechanisms. As traditional biological experiments are costly and time-consuming, computational models can be considered as effective complementary tools. In this study, we propose a novel model of robust orthogonal non-negative matrix tri-factorization (NMTF) with self-paced learning and dual hypergraph regularization, named SPLHRNMTF, to predict miRNA-disease associations. More specifically, SPLHRNMTF first uses a non-linear fusion method to obtain miRNA and disease comprehensive similarity. Subsequently, the improved miRNA-disease association matrix is reformulated based on weighted k-nearest neighbor profiles to correct false-negative associations. In addition, we utilize

Indexed as

Computational BiologyMicroRNAsAlgorithmsGenetic Predisposition to DiseaseHumansLung NeoplasmsMachine LearningMicroRNAsHypergraph regularizationMiRNA-disease associationsNon-negative matrix tri-factorizationSelf-paced learning

Identifiers

PMID39304826
PMCPMC11414150

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.