Evidence map›Paper›PMID 39320016›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2025

Expression analysis of genes including Zfhx4 in mice and zebrafish reveals a temporospatial conserved molecular basis underlying craniofacial development.

Shujie Liu, Lin Xu, Makoto Kashima, Rika Narumi, Yoshifumi Takahata, Eriko Nakamura, Hirotoshi Shibuya, Masaru Tamura, Yuki Shida, Toshihiro Inubushi and 7 more

Abstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Chemical-induced heart defects using a transgenic zebrafish model.Toxicological sciences : an official journal of the Society of Toxicology · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Shujie LiuR&D, Safety Science Research, Kao Corporation, Kawasaki, Japan.ORCID 0009-0008-6633-6806
Lin XuDepartment of Orthodontics and Dentofacial Orthopedics, Osaka University Graduate School of Dentistry, Suita, Japan.
Makoto KashimaDepartment of Chemistry and Biological Science, College of Science and Engineering, Aoyama Gakuin University, Sagamihara, Japan.ORCID 0000-0002-3953-9033
Rika NarumiR&D, Safety Science Research, Kao Corporation, Kawasaki, Japan.
Yoshifumi TakahataDepartment of Molecular and Cellular Biochemistry, Osaka University Graduate School of Dentistry, Suita, Japan.
Eriko NakamuraDepartment of Molecular and Cellular Biochemistry, Osaka University Graduate School of Dentistry, Suita, Japan.
Hirotoshi ShibuyaMouse Phenotype Analysis Division, RIKEN BioResource Research Center, Tsukuba, Japan.
Masaru TamuraMouse Phenotype Analysis Division, RIKEN BioResource Research Center, Tsukuba, Japan.
Yuki ShidaDepartment of Orthodontics and Dentofacial Orthopedics, Osaka University Graduate School of Dentistry, Suita, Japan.
Toshihiro InubushiDepartment of Orthodontics and Dentofacial Orthopedics, Osaka University Graduate School of Dentistry, Suita, Japan.
Yuko NukadaR&D, Safety Science Research, Kao Corporation, Tochigi, Japan.
Masaaki MiyazawaR&D, Safety Science Research, Kao Corporation, Tochigi, Japan.
Kenji HataDepartment of Molecular and Cellular Biochemistry, Osaka University Graduate School of Dentistry, Suita, Japan.
Riko NishimuraDepartment of Molecular and Cellular Biochemistry, Osaka University Graduate School of Dentistry, Suita, Japan.
Takashi YamashiroDepartment of Orthodontics and Dentofacial Orthopedics, Osaka University Graduate School of Dentistry, Suita, Japan.
Junichi TasakiR&D, Safety Science Research, Kao Corporation, Kawasaki, Japan.ORCID 0000-0003-1798-5160
Hiroshi KurosakaDepartment of Orthodontics and Dentofacial Orthopedics, Osaka University Graduate School of Dentistry, Suita, Japan.ORCID 0000-0002-8956-5467

Funding

Japan Society for the Promotion of Science 19H03858Japan Society for the Promotion of Science 23K27803
6 · The paper itself

Abstract

backgroundEmbryonic craniofacial development involves several cellular and molecular events that are evolutionarily conserved among vertebrates. Vertebrate models such as mice and zebrafish have been used to investigate the molecular and cellular etiologies underlying human craniofacial disorders, including orofacial clefts. However, the molecular mechanisms underlying embryonic development in these two species are unknown. Therefore, elucidating the shared mechanisms of craniofacial development between disease models is crucial to understanding the underlying mechanisms of phenotypes in individual species.

resultsWe selected mice and zebrafish as model organisms to compare various events during embryonic craniofacial development. We identified genes (Sox9, Zfhx3 and 4, Cjun, and Six1) exhibiting similar temporal expression patterns between these species through comprehensive and stage-matched gene expression analyses. Expression analysis revealed similar gene expression in hypothetically corresponding tissues, such as the mice palate and zebrafish ethmoid plate. Furthermore, loss-of-function analysis of Zfhx4/zfhx4, a causative gene of human craniofacial anomalies including orofacial cleft, in both species resulted in deformed skeletal elements such as the palatine and ethmoid plate in mice and zebrafish, respectively.

conclusionsThese results demonstrate that these disease models share common molecular mechanisms, highlighting their usefulness in modeling craniofacial defects in humans.

Indexed as

Gene Expression Regulation, DevelopmentalHomeodomain ProteinsSkullZebrafishZebrafish ProteinsAnimalsCraniofacial AbnormalitiesMiceHomeodomain ProteinsZebrafish Proteinscranial neural crest cellsdisease modelsloss‐of‐function analysispalatogenesisstage‐matched gene expression analysistemporal expression patterns

Identifiers

PMID39320016
PMCPMC11877995

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.