ArticleNature2024
Intragenic DNA inversions expand bacterial coding capacity.
Abstract read
In one paragraph
Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
23 citing papers in PubMed.
- Non-canonical gene amplifications facilitate adaptive evolution in bacteria.Nature microbiology · 2026Article
- A phase-variable capsule facilitatesmBio · 2026Article
- Complex adaptive architectures constrain the pace of adaptations sweeping across human gut microbiomes.bioRxiv : the preprint server for biology · 2026Article
- Epigenetic phase variation in the gut microbiome enhances bacterial adaptation.Cell host & microbe · 2026Article
- Article
- Article
- Evolving threats: Leveraging C. elegans to decode the virulence profiles of highly related environmental Salmonella Newport isolates.PloS one · 2026Article
- Bacteriophage-driven DNA inversions shape bacterial functionality and long-term co-existence inGut microbes · 2025Article
- Pharmacomicrobiomics.Clinical pharmacology and therapeutics · 2025Review
- Maximizing bacterial survival: integrating sense-and-respond and bet-hedging mechanisms.Trends in microbiology · 2025Review
- Lessons from the model gut BacteroidalesJournal of bacteriology · 2025Review
- Carbohydrates and the oxidative branch of the pentose phosphate pathway modifyJournal of bacteriology · 2025Article
- BlihIA-A Novel Type I Restriction-Modification System fromInternational journal of molecular sciences · 2025Article
- Dissecting microbial communities with single-cell transcriptome analysis.Science (New York, N.Y.) · 2025Review
- How and when organisms edit their own genomes.Nature genetics · 2025Review
- Dietary carbohydrates alter immune-modulatory functionalities and DNA inversions in Bacteroides thetaiotaomicron.Nature communications · 2025Article
- Comprehensive profiling of genomic invertons in defined gut microbial community reveals associations with intestinal colonization and surface adhesion.Microbiome · 2025Article
- Do the Shuffle: Expanding the Synthetic Biology Toolkit for Shufflon-like Recombination Systems.ACS synthetic biology · 2025Article
- 100+ years of phase variation: the premier bacterial bet-hedging phenomenon.Microbiology (Reading, England) · 2025Review
- High strain-level diversity of Bradyrhizobium across Australian soils.The ISME journal · 2025Article
Corrections and comments
- Update of
Authors and funding
13 authors.
Rachael B Chanin *Department of Medicine, Division of Hematology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-4625-356X
Patrick T West *Department of Medicine, Division of Hematology, Stanford University, Stanford, CA, USA.
Jakob WirbelDepartment of Medicine, Division of Hematology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-4073-3562
Matthew O GillDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-0650-2450
Gabriella Z M GreenDepartment of Medicine, Division of Hematology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-8433-4264
Ryan M ParkDepartment of Genetics, Stanford University, Stanford, CA, USA.
Nora EnrightDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-1557-6638
Arjun M MiklosDepartment of Medicine, Division of Hematology, Stanford University, Stanford, CA, USA.
Angela S HickeyDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-4407-6894
Erin F BrooksDepartment of Medicine, Division of Hematology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-5834-0679
Krystal K LumDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-7523-0420
Ileana M CristeaDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-6533-2458
Ami S BhattDepartment of Medicine, Division of Hematology, Stanford University, Stanford, CA, USA. asbhatt@stanford.edu.ORCID http://orcid.org/0000-0001-8099-2975
Funding
INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2MCulture-free pathogen tracking in hospitalized patientsR01AI143757 · NIAID · STANFORD UNIVERSITY · PI BHATT, AMI SIDDHARTH · 2020 to 2023
$3.0MProgram in Translational and Experimental HematologyT32HL120824 · NHLBI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2014 to 2023
$2.4MEmerging novel mechanisms of antibiotic resistance in the prevalent foodborne pathogen, SalmonellaR01AI148623 · NIAID · STANFORD UNIVERSITY · PI BHATT, AMI SIDDHARTH · 2019 to 2023
$2.0MNRSA TrainingTL1TR003019 · NCATS · RUTGERS BIOMEDICAL/HEALTH SCIENCES-RBHS · PI SCOTTO, KATHLEEN W. · 2019 to 2023
$1.9MNCATS NIH HHS TL1 TR003019NHGRI NIH HHS T32 HG000044NHLBI NIH HHS T32 HL120824NIAID NIH HHS R01 AI143757NIAID NIH HHS R01 AI148623
Abstract
Bacterial populations that originate from a single bacterium are not strictly clonal and often contain subgroups with distinct phenotypes
Indexed as
BacteroidesDNA, BacterialGenes, BacterialOpen Reading FramesSequence InversionDatasets as TopicGene Expression Regulation, BacterialGenes, ArchaealGenetic FitnessGenome, ArchaealGenome, BacterialPromoter Regions, GeneticReproducibility of ResultsSequence Analysis, DNAThiamineDNA, BacterialThiamine
Identifiers
PMID
39322669What Socratic holds
Textmetadata
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.