Evidence map›Paper›PMID 39322756›Full record

ArticleThe EMBO journal2024

Chromatin protein complexes involved in gene repression in lamina-associated domains.

Stefano G Manzo, Abdelghani Mazouzi, Christ Leemans, Tom van Schaik, Nadia Neyazi, Marjon S van Ruiten, Benjamin D Rowland, Thijn R Brummelkamp, Bas van Steensel

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Stefano G ManzoDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID http://orcid.org/0000-0002-6911-3527
Abdelghani MazouziOncode Institute, Amsterdam, the Netherlands.ORCID http://orcid.org/0000-0003-0298-6304
Christ LeemansDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Tom van SchaikDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Nadia NeyaziDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Marjon S van RuitenDivision of Cell Biology, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Benjamin D RowlandDivision of Cell Biology, Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID http://orcid.org/0000-0002-0694-8463
Thijn R BrummelkampOncode Institute, Amsterdam, the Netherlands.
Bas van SteenselDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands. b.v.steensel@nki.nl.ORCID http://orcid.org/0000-0002-0284-0404

Funding

AIRC-Marie Curie iCARE2.0 (COFUND) 800924EC | European Research Council (ERC) 694466EC | European Research Council (ERC) 772471EC | FP7 | People | FP7 People: Marie-Curie Actions (FP7 People) 838555EMBO long-term fellowship ALTF158-2018Next generation EU-MUR MSCA Young Researcher PNRR_MSCA22SMANZ_01NWO-VICI VI.C.202.098
6 · The paper itself

Abstract

Lamina-associated domains (LADs) are large chromatin regions that are associated with the nuclear lamina (NL) and form a repressive environment for transcription. The molecular players that mediate gene repression in LADs are currently unknown. Here, we performed FACS-based whole-genome genetic screens in human cells using LAD-integrated fluorescent reporters to identify such regulators. Surprisingly, the screen identified very few NL proteins, but revealed roles for dozens of known chromatin regulators. Among these are the negative elongation factor (NELF) complex and interacting factors involved in RNA polymerase pausing, suggesting that regulation of transcription elongation is a mechanism to repress transcription in LADs. Furthermore, the chromatin remodeler complex BAF and the activation complex Mediator can work both as activators and repressors in LADs, depending on the local context and possibly by rewiring heterochromatin. Our data indicate that the fundamental regulators of transcription and chromatin remodeling, rather than interaction with NL proteins, play a major role in transcription regulation within LADs.

Indexed as

ChromatinNuclear LaminaChromatin Assembly and DisassemblyDNA-Binding ProteinsGene Expression RegulationHumansNuclear ProteinsTranscription FactorsTranscription, GeneticChromatinDNA-Binding ProteinsNuclear ProteinsTranscription FactorsChromatinGene RepressionLamina-associated DomainsMediatorNuclear Lamina

Identifiers

PMID39322756
PMCPMC11535540

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.