Evidence map›Paper›PMID 39325669›Full record

ArticleThe FEBS journal2024

Crystal structure of Alzheimer's disease phospholipase D3 provides a molecular basis for understanding its normal and pathological functions.

Kenta Ishii, Stefan J Hermans, Maria Eleni Georgopoulou, Tracy L Nero, Nancy C Hancock, Gabriela A N Crespi, Michael A Gorman, Jonathan H Gooi, Michael W Parker

Abstract read
In one paragraph

Article in The FEBS journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kenta IshiiStructural Biology Laboratory, St Vincent's Institute of Medical Research, Fitzroy, Australia.
Stefan J HermansStructural Biology Laboratory, St Vincent's Institute of Medical Research, Fitzroy, Australia.
Maria Eleni GeorgopoulouStructural Biology Laboratory, St Vincent's Institute of Medical Research, Fitzroy, Australia.
Tracy L NeroDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Australia.
Nancy C HancockStructural Biology Laboratory, St Vincent's Institute of Medical Research, Fitzroy, Australia.
Gabriela A N CrespiStructural Biology Laboratory, St Vincent's Institute of Medical Research, Fitzroy, Australia.
Michael A GormanDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Australia.
Jonathan H GooiStructural Biology Laboratory, St Vincent's Institute of Medical Research, Fitzroy, Australia.
Michael W ParkerStructural Biology Laboratory, St Vincent's Institute of Medical Research, Fitzroy, Australia.ORCID 0000-0002-3101-1138

Funding

ARC Industry Transformation Training Centre for Cryo-electron Microscopy of Membrane Proteins IC200100052National Health and Medical Research Council APP1194263
6 · The paper itself

Abstract

Human 5'-3' exonuclease PLD3, a member of the phospholipase D family of enzymes, has been validated as a therapeutic target for treating Alzheimer's disease. Here, we have determined the crystal structure of the luminal domain of the enzyme at 2.3 Å resolution, revealing a bilobal structure with a catalytic site located between the lobes. We then compared the structure with published crystal structures of other human PLD family members which revealed that a number of catalytic and lipid recognition residues, previously shown to be key for phospholipase activity, are not conserved or, are absent. This led us to test whether the enzyme is actually a phospholipase. We could not measure any phospholipase activity but the enzyme shows robust nuclease activity. Finally, we have mapped key single nucleotide polymorphisms onto the structure which reveals plausible reasons as to why they have an impact on Alzheimer's disease.

Indexed as

Alzheimer DiseaseCatalytic DomainModels, MolecularPhospholipase DAmino Acid SequenceCrystallography, X-RayExodeoxyribonucleasesHumansPolymorphism, Single NucleotideProtein ConformationExodeoxyribonucleasesPhospholipase DPLD3 protein, humanAlzheimer's diseaseenzymenucleasephospholipaseX‐ray crystallography

Identifiers

PMID39325669
PMCPMC11653685

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.