Evidence map›Paper›PMID 39333464›Full record

ArticleNature communications2024

Uridylation regulates mRNA decay directionality in fission yeast.

Maciej Grochowski, Lidia Lipińska-Zubrycka, StJohn Townsend, Anna Golisz-Mocydlarz, Monika Zakrzewska-Płaczek, Grzegorz Brzyżek, Borna Jurković, Szymon Świeżewski, Markus Ralser, Michał Małecki

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Maciej Grochowski *Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.
Lidia Lipińska-Zubrycka *Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID 0000-0002-8163-0770
StJohn TownsendDepartment of Biochemistry, Charité - Universitätsmedizin Berlin, Berlin, Germany.
Anna Golisz-MocydlarzInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID 0000-0002-7539-1830
Monika Zakrzewska-PłaczekInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID 0000-0002-0538-7721
Grzegorz BrzyżekLaboratory of Seeds Molecular Biology, Institute of Biochemistry and Biophysics, PAS, Warsaw, Poland.ORCID 0000-0002-6439-4462
Borna JurkovićInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID 0009-0008-9752-9061
Szymon ŚwieżewskiLaboratory of Seeds Molecular Biology, Institute of Biochemistry and Biophysics, PAS, Warsaw, Poland.
Markus RalserDepartment of Biochemistry, Charité - Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0001-9535-7413
Michał MałeckiInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland. m.malecki@igib.uw.edu.pl.ORCID 0000-0002-1525-5036

Funding

Fundacja na rzecz Nauki Polskiej (Foundation for Polish Science) POIR.04.04.00-00-4316/17
6 · The paper itself

Abstract

Cytoplasmic mRNA decay is effected by exonucleolytic degradation in either the 5' to 3' or 3' to 5' direction. Pervasive terminal uridylation is implicated in mRNA degradation, however, its functional relevance for bulk mRNA turnover remains poorly understood. In this study, we employ genome-wide 3'-RACE (gw3'-RACE) in the model system fission yeast to elucidate the role of uridylation in mRNA turnover. We observe widespread uridylation of shortened poly(A) tails, promoting efficient 5' to 3' mRNA decay and ensuring timely and controlled mRNA degradation. Inhibition of this uridylation process leads to excessive deadenylation and enhanced 3' to 5' mRNA decay accompanied by oligouridylation. Strikingly we found that uridylation of poly(A) tails and oligouridylation of non-polyadenylated substrates are catalysed by different terminal uridyltransferases Cid1 and Cid16 respectively. Our study sheds new light on the intricate regulatory mechanisms underlying bulk mRNA turnover, demonstrating the role of uridylation in modulating mRNA decay pathways.

Indexed as

RNA, MessengerRNA StabilitySchizosaccharomycesSchizosaccharomyces pombe ProteinsGene Expression Regulation, FungalNucleotidyltransferasesPoly ARNA, FungalUridineCid1 protein, S pombeNucleotidyltransferasesPoly ARNA, FungalRNA, MessengerSchizosaccharomyces pombe ProteinsUridine

Identifiers

PMID39333464
PMCPMC11436920

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.