Evidence map›Paper›PMID 39333893›Full record

ArticleBMC cardiovascular disorders2024

Missense mutations in the CITED2 gene may contribute to congenital heart disease.

Hira Yaqoob, Hussain Ahmad, Syed Irtiza Ali, Najma Patel, Afsheen Arif

Abstract read
In one paragraph

Article in BMC cardiovascular disorders, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hira YaqoobThe Karachi Institute of Biotechnology and Genetic Engineering, University of Karachi, Karachi, Pakistan.
Hussain AhmadThe Karachi Institute of Biotechnology and Genetic Engineering, University of Karachi, Karachi, Pakistan.
Syed Irtiza AliThe Karachi Institute of Biotechnology and Genetic Engineering, University of Karachi, Karachi, Pakistan.
Najma PatelNational Institute of Cardiovascular Diseases Pakistan Rafiqui (H.J.), Shaheed Road, Karachi, Pakistan.
Afsheen ArifThe Karachi Institute of Biotechnology and Genetic Engineering, University of Karachi, Karachi, Pakistan. afsheen.arif@uok.edu.pk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCongenital heart disease (CHD) is a lifelong abnormality present from birth. Multiple studies have shown that mutations in genes involved in heart development could cause congenital heart disease. The CITED2 gene works as a transcription factor in the hypoxic pathway for the development of the heart. Therefore, five CHD types, ventricular septal defect, atrial septal defect, atrioventricular septal defect, tetralogy of fallot, and patent ductus arteriosus, were evaluated by conducting a targeted single nucleotide polymorphism (SNP) analysis of the CITED2 gene variant rs375393125 (T > C). This study aimed to identify the association of CITED2 gene mutations in CHD patients.

methodsThree hundred fifty samples, 250 from patients and 100 from controls, were collected for this genetic analysis. Allele-specific PCR and gel electrophoresis were used to identify the target missense mutations. The genotypic results of the CHDs were further validated through Sanger sequencing.

resultsThe frequency of the homozygous mutant (CC) in CHD patients was 48.4%, and of the heterozygous mutant (TC) genotype was 11.4%; these percentages are higher than controls (1%). The control samples had only one heterozygous TC and no homozygous CC genotype. The chi-square value was obtained at 103.9 with a probability of 0.05, more significant than the significance value of 21.03. The odds ratio was 43.7, which is > 1. The calculated value of ANOVA was 11.6, which was more significant than the F critical value of 3.7. As a result of sequencing, the mutant sample of each selected CHD type was found heterozygous or homozygous, and the results were like those obtained through conventional PCR.

conclusionThe samples of CHD patients showed mutations. Therefore, the CITED2 gene SNP might be associated with CHD.

Indexed as

Genetic Predisposition to DiseaseHeart Defects, CongenitalMutation, MissensePolymorphism, Single NucleotideRepressor ProteinsTrans-ActivatorsAdolescentCase-Control StudiesChildChild, PreschoolChinaDNA Mutational AnalysisFemaleGene FrequencyGenetic Association StudiesHeterozygoteCITED2 protein, humanRepressor ProteinsTrans-ActivatorsAllele-specific PCRCITED2 geneCongenital heart disease (CHD)GenotypeSequencingSingle nucleotide polymorphism (SNP)

Identifiers

PMID39333893
PMCPMC11429617

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.