Evidence map›Paper›PMID 39347576›Full record

ArticleCancer research communications2024

Prostate Cancer Progression Modeling Provides Insight into Dynamic Molecular Changes Associated with Progressive Disease States.

Runpu Chen, Li Tang, Thomas Melendy, Le Yang, Steve Goodison, Yijun Sun

Abstract read
In one paragraph

Article in Cancer research communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Metabolic convergence of diabetes and prostate cancer: from dysglycemia to tumor microenvironment reprogramming.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Review
  2. Clinicogenomic Insights for Progression-Free Survival in Prostate Cancer.International journal of environmental research and public health · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Runpu ChenDepartment of Microbiology and Immunology, University at Buffalo, State University of New York, Buffalo, New York.ORCID 0000-0001-5290-6064
Li TangDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, Buffalo, New York.ORCID 0000-0002-6776-1846
Thomas MelendyDepartment of Microbiology and Immunology, University at Buffalo, State University of New York, Buffalo, New York.ORCID 0000-0003-1558-6262
Le YangDepartment of Microbiology and Immunology, University at Buffalo, State University of New York, Buffalo, New York.ORCID 0000-0002-9750-5691
Steve GoodisonDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, Florida.ORCID 0000-0003-4527-7268
Yijun SunDepartment of Microbiology and Immunology, University at Buffalo, State University of New York, Buffalo, New York.ORCID 0000-0003-0610-6132

Funding

Prognostic analysis and progression modeling of basal-like breast cancer using multi-region sequencingR01CA269075 · NCI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI Steve Goodison, Yijun Sun · 2023 to 2026
$2.5M
Disease Progression Modeling of Bladder CancerR01CA266113 · NCI · MAYO CLINIC JACKSONVILLE · PI Steve Goodison, Yijun Sun · 2022 to 2026
$2.0M
Advanced Computational Approaches to Delineating Dynamic Cancer Progression Processes by Using Massive Static Sample DataR01CA241123 · NCI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI GOODISON, STEVE, SUN, YIJUN · 2020 to 2024
$1.8M
Creation and Validation of cell-based screening systems for SARS-CoV-2 drug targetsR21AI161470 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MELENDY, THOMAS · 2022 to 2023
$439k
Slowing of the polyomavirus DNA replication fork in response to DDRR21AI164081 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MELENDY, THOMAS · 2021 to 2022
$439k
NCI NIH HHS R01 CA241123NCI NIH HHS R01 CA266113NCI NIH HHS R01 CA269075NIAID NIH HHS R21 AI161470NIAID NIH HHS R21 AI164081
6 · The paper itself

Abstract

Prostate cancer is a significant health concern and the most commonly diagnosed cancer in men worldwide. Understanding the complex process of prostate tumor evolution and progression is crucial for improved diagnosis, treatments, and patient outcomes. Previous studies have focused on unraveling the dynamics of prostate cancer evolution using phylogenetic or lineage analysis approaches. However, those approaches have limitations in capturing the complete disease process or incorporating genomic and transcriptomic variations comprehensively. In this study, we applied a novel computational approach to derive a prostate cancer progression model using multidimensional data from 497 prostate tumor samples and 52 tumor-adjacent normal samples obtained from The Cancer Genome Atlas study. The model was validated using data from an independent cohort of 545 primary tumor samples. By integrating transcriptomic and genomic data, our model provides a comprehensive view of prostate tumor progression, identifies crucial signaling pathways and genetic events, and uncovers distinct transcription signatures associated with disease progression. Our findings have significant implications for cancer research and hold promise for guiding personalized treatment strategies in prostate cancer. SIGNIFICANCE: We developed and validated a progression model of prostate cancer using >1,000 tumor and normal tissue samples. The model provided a comprehensive view of prostate tumor evolution and progression.

Indexed as

Disease ProgressionProstatic NeoplasmsGene Expression ProfilingGene Expression Regulation, NeoplasticGenomicsHumansMaleModels, BiologicalTranscriptome

Identifiers

PMID39347576
PMCPMC11500312

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.