Evidence map›Paper›PMID 39349591›Full record

ArticleNPJ precision oncology2024

Integrated multi-omics assessment of lineage plasticity in a prostate cancer patient with brain and dural metastases.

Megan L Ludwig, David Moline, Alec Horrmann, Ella Boytim, Gabrianne Larson, Ali T Arafa, Masooma Sayeda, John R Lozada, Hannah E Bergom, Abderrahman Day and 6 more

Abstract read
In one paragraph

Article in NPJ precision oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Megan L LudwigDepartment of Pharmacology, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0003-3133-3679
David MolineDepartment of Medicine, Division of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0009-0006-4725-5547
Alec HorrmannDepartment of Pharmacology, University of Minnesota, Minneapolis, MN, USA.
Ella BoytimDepartment of Medicine, Division of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, MN, USA.
Gabrianne LarsonDepartment of Pharmacology, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0002-4831-715X
Ali T ArafaDepartment of Pharmacology, University of Minnesota, Minneapolis, MN, USA.
Masooma SayedaDepartment of Medicine, Division of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, MN, USA.
John R LozadaDepartment of Medicine, Division of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, MN, USA.
Hannah E BergomDepartment of Medicine, Division of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0003-2157-6562
Abderrahman DayDepartment of Medicine, Division of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, MN, USA.
Sandhyarani DasarajuDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN, USA.
Scott M DehmDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN, USA.
Paari MuruganDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN, USA.
Justin HwangDepartment of Medicine, Division of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0003-1686-7103
Justin M DrakeDepartment of Pharmacology, University of Minnesota, Minneapolis, MN, USA. jdrake@umn.edu.
Emmanuel S AntonarakisDepartment of Medicine, Division of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, MN, USA. anton401@umn.edu.

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Timothy C. Hallstrom · 1998 to 2026
$100.4M
University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UM1TR004405 · NCATS · UNIVERSITY OF MINNESOTA · PI Bruce R Blazar, Damien A Fair · 2023 to 2026
$30.8M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008244 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SHIMIZU, YOJI · 1988 to 2024
$13.6M
TRAINING GRANT IN MICROBIOLOGY/CANCER RESEARCHT32CA009138 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Scott M. Dehm · 1985 to 2026
$11.3M
RET Regulation and Targeting in Neuroendocrine Prostate CancerR01CA269801 · NCI · UNIVERSITY OF MINNESOTA · PI Justin Michael Drake · 2022 to 2026
$2.2M
Targeting early events in prostate cancer lineage plasticityR01CA270539 · NCI · UNIVERSITY OF MINNESOTA · PI Scott M. Dehm · 2023 to 2026
$1.8M
A transformative next-generation Orbitrap Tribrid system for the UMN and Upper MidwestS10OD028717 · OD · UNIVERSITY OF MINNESOTA · PI GRIFFIN, TIMOTHY J. · 2020 to 2020
$1.2M
Tissue-Resident Adaptive CD56bright NK Cell Responses in CancerF30CA294723 · NCI · UNIVERSITY OF MINNESOTA · PI John Roy Lozada · 2024 to 2026
$142k
American Cancer Society (American Cancer Society, Inc.) PF-23-1153194-01-CDPAmerican Society of Hematology (ASH) Minority Medical Student Award ProgramNCATS NIH HHS UM1 TR004405NCI NIH HHS F30 CA294723NCI NIH HHS P30 CA077598NCI NIH HHS R01 CA269801NCI NIH HHS R01 CA270539NCI NIH HHS T32 CA009138NIGMS NIH HHS T32 GM008244NIH HHS S10 OD028717U.S. Department of Defense (United States Department of Defense) W81XWH-22-2-0025U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01CA269801U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) F30CA294723
6 · The paper itself

Abstract

Metastases to the brain are rare in prostate cancer. Here, we describe a patient with two treatment-emergent metastatic lesions, one to the brain with neuroendocrine prostate cancer (NEPC) histology and one to the dural membrane of adenocarcinoma histology. We performed genomic, transcriptomic, and proteomic characterization of these lesions and the primary tumor to investigate molecular features promoting these metastases. The two metastatic lesions had high genomic similarity, including TP53 mutation and PTEN deletion, with the most striking difference being the additional loss of RB1 in the NEPC lesion. Interestingly, the dural lesion expressed both androgen receptor and neuroendocrine markers, suggesting amphicrine carcinoma (AMPC). When analyzing pioneer transcription factors, the AMPC lesion exhibited elevated FOXA1 activity while the brain NEPC lesion showed elevated HOXC10, NFYB, and OTX2 expression suggesting novel roles in NEPC formation or brain tropism. Our results highlight the utility of performing multi-omic characterization, especially in rare cancer subtypes.

Identifiers

PMID39349591
PMCPMC11443004

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.