Evidence mapPaperPMID 39355236Full record

ArticleFrontiers in immunology2024

Prognostic cellular senescence-related lncRNAs patterns to predict clinical outcome and immune response in colon cancer.

Lichao Cao, Fang Chen, Long Xu, Jian Zeng, Yun Wang, Shenrui Zhang, Ying Ba, Hezi Zhang

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Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lichao CaoShenzhen Nucleus Gene Technology Co., Ltd., Shenzhen, Guangdong, China.
Fang ChenShenzhen Nucleus Gene Technology Co., Ltd., Shenzhen, Guangdong, China.
Long XuDepartment of Gastroenterology and Hepatology, Shenzhen University General Hospital, Shenzhen, Guangdong, China.
Jian ZengLonghua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong, China.
Yun WangLonghua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong, China.
Shenrui ZhangShenzhen Nucleus Gene Technology Co., Ltd., Shenzhen, Guangdong, China.
Ying BaShenzhen Nucleus Gene Technology Co., Ltd., Shenzhen, Guangdong, China.
Hezi ZhangShenzhen Nucleus Gene Technology Co., Ltd., Shenzhen, Guangdong, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Cellular senescence (CS) is believed to be a major factor in the evolution of cancer. However, CS-related lncRNAs (CSRLs) involved in colon cancer regulation are not fully understood. Our goal was to create a novel CSRLs prognostic model for predicting prognosis and immunotherapy and exploring its potential molecular function in colon cancer. Methods: The mRNA sequencing data and relevant clinical information of GDC TCGA Colon Cancer (TCGA-COAD) were obtained from UCSC Xena platform, and CS-associated genes was acquired from the CellAge website. Pearson correlation analysis was used to identify CSRLs. Then we used Kaplan-Meier survival curve analysis and univariate Cox analysis to acquire prognostic CSRL. Next, we created a CSRLs prognostic model using LASSO and multivariate Cox analysis, and evaluated its prognostic power by Kaplan-Meier and ROC curve analysis. Besides, we explored the difference in tumor microenvironment, somatic mutation, immunotherapy, and drug sensitivity between high-risk and low-risk groups. Finally, we verified the functions of MYOSLID in cell experiments. Results: Three CSRLs (AC025165.1, LINC02257 and MYOSLID) were identified as prognostic CSRLs. The prognostic model exhibited a powerful predictive ability for overall survival and clinicopathological features in colon cancer. Moreover, there was a significant difference in the proportion of immune cells and the expression of immunosuppressive point biomarkers between the different groups. The high-risk group benefited from the chemotherapy drugs, such as Teniposide and Mitoxantrone. Finally, cell proliferation and CS were suppressed after MYOSLID knockdown. Conclusion: CSRLs are promising biomarkers to forecast survival and therapeutic responses in colon cancer patients. Furthermore, MYOSLID, one of 3-CSRLs in the prognostic model, could dramatically regulate the proliferation and CS of colon cancer.

Indexed as

Biomarkers, TumorCellular SenescenceColonic NeoplasmsGene Expression Regulation, NeoplasticRNA, Long NoncodingTumor MicroenvironmentCell Line, TumorFemaleHumansMaleMiddle AgedPrognosisBiomarkers, TumorRNA, Long Noncodingcellular senescencecolon cancerimmune responselncRNAsMYOSLID

Identifiers

PMID39355236
PMCPMC11443174

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.