Evidence map›Paper›PMID 39373800›Full record

ArticleJournal of molecular neuroscience : MN2024

Exploring the hub Genes and Potential Mechanisms of Complement system-related Genes in Parkinson Disease: Based on Transcriptome Sequencing and Mendelian Randomization.

Xin Wang, Gaoming Yang, Yali Lai, Yuanyuan Li, Xindong Liu

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In one paragraph

Article in Journal of molecular neuroscience : MN, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xin WangDepartment of Neurology, The Second Affiliated Hospital of Chengdu Medical College (China National Nuclear Corporation 416 hospital), Chengdu, 610000, China.ORCID http://orcid.org/0000-0002-1141-7464
Gaoming YangDepartment of Neurology, The Second Affiliated Hospital of Chengdu Medical College (China National Nuclear Corporation 416 hospital), Chengdu, 610000, China.
Yali LaiDepartment of Neurology, The Second Affiliated Hospital of Chengdu Medical College (China National Nuclear Corporation 416 hospital), Chengdu, 610000, China.
Yuanyuan LiDepartment of Neurology, The Second Affiliated Hospital of Chengdu Medical College (China National Nuclear Corporation 416 hospital), Chengdu, 610000, China.
Xindong LiuDepartment of Neurology, The Second Affiliated Hospital of Chengdu Medical College (China National Nuclear Corporation 416 hospital), Chengdu, 610000, China. lxd416@163.com.

Funding

the Chengdu Health Commission Foundation 2022139
6 · The paper itself

Abstract

An accurate diagnosis of Parkinson's disease (PD) remains challenging and the exact cause of the disease is unclean. The aims are to identify hub genes associated with the complement system in PD and to explore their underlying molecular mechanisms. Initially, differentially expressed genes (DEGs) and key module genes related to PD were mined through differential expression analysis and WGCNA. Then, differentially expressed CSRGs (DE-CSRGs) were obtained by intersecting the DEGs, key module genes and CSRGs. Subsequently, MR analysis was executed to identify genes causally associated with PD. Based on genes with significant MR results, the expression level and diagnostic performance verification were achieved to yield hub genes. Functional enrichment and immune infiltration analyses were accomplished to insight into the pathogenesis of PD. qRT-PCR was employed to evaluate the expression levels of hub genes. After MR analysis and related verification, CD93, CTSS, PRKCD and TLR2 were finally identified as hub genes. Enrichment analysis indicated that the main enriched pathways for hub genes. Immune infiltration analysis found that the hub genes showed significant correlation with a variety of immune cells (such as myeloid-derived suppressor cell and macrophage). In the qRT-PCR results, the expression levels of CTSS, PRKCD and TLR2 were consistent with those we obtained from public databases. Hence, we mined four hub genes associated with complement system in PD which provided novel perspectives for the diagnosis and treatment of PD.

Indexed as

Parkinson DiseaseTranscriptomeComplement System ProteinsGene Regulatory NetworksHumansMendelian Randomization AnalysisToll-Like Receptor 2Complement System ProteinsTLR2 protein, humanToll-Like Receptor 2Complement systemHub genesMolecular mechanismsMR analysisParkinson’s disease

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.