Evidence map›Paper›PMID 39379743›Full record

ArticleCellular and molecular life sciences : CMLS2024

Functional diversification process of opsin genes for teleost visual and pineal photoreceptions.

Chihiro Fujiyabu, Fuki Gyoja, Keita Sato, Emi Kawano-Yamashita, Hideyo Ohuchi, Takehiro G Kusakabe, Takahiro Yamashita

Abstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chihiro FujiyabuDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan.ORCID http://orcid.org/0000-0001-9289-7406
Fuki GyojaInstitute for Integrative Neurobiology and Department of Biology, Graduate School of Natural Science, Konan University, Hyogo, 658-8501, Japan.ORCID http://orcid.org/0000-0002-7187-7163
Keita SatoDepartment of Cytology and Histology, Faculty of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, 700-8558, Japan.ORCID http://orcid.org/0000-0002-7089-2951
Emi Kawano-YamashitaDepartment of Chemistry, Biology and Environmental Science, Faculty of Science, Nara Women's University, Nara, 630-8506, Japan.ORCID http://orcid.org/0000-0002-9360-2144
Hideyo OhuchiDepartment of Cytology and Histology, Faculty of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, 700-8558, Japan.ORCID http://orcid.org/0000-0003-1961-606X
Takehiro G KusakabeInstitute for Integrative Neurobiology and Department of Biology, Graduate School of Natural Science, Konan University, Hyogo, 658-8501, Japan.ORCID http://orcid.org/0000-0002-8325-3665
Takahiro YamashitaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan. yamashita.takahiro.4z@kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-7956-9288

Funding

Core Research for Evolutional Science and Technology JPMJCR1753Japan Agency for Medical Research and Development 22gm1510007Japan Society for the Promotion of Science 21K19280Japan Society for the Promotion of Science 22KJ1928Japan Society for the Promotion of Science 23H02492Japan Society for the Promotion of Science 23K05850Japan Society for the Promotion of Science 23K27185Japan Society for the Promotion of Science 24K09530Japan Society for the Promotion of Science 24K09531
6 · The paper itself

Abstract

Most vertebrates have a rhodopsin gene with a five-exon structure for visual photoreception. By contrast, teleost fishes have an intron-less rhodopsin gene for visual photoreception and an intron-containing rhodopsin (exo-rhodopsin) gene for pineal photoreception. Here, our analysis of non-teleost and teleost fishes in various lineages of the Actinopterygii reveals that retroduplication after branching of the Polypteriformes produced the intron-less rhodopsin gene for visual photoreception, which converted the parental intron-containing rhodopsin gene into a pineal opsin in the common ancestor of the Teleostei. Additional analysis of a pineal opsin, pinopsin, shows that the pinopsin gene functions as a green-sensitive opsin together with the intron-containing rhodopsin gene for pineal photoreception in tarpon as an evolutionary intermediate state but is missing in other teleost fishes, probably because of the redundancy with the intron-containing rhodopsin gene. We propose an evolutionary scenario where unique retroduplication caused a "domino effect" on the functional diversification of teleost visual and pineal opsin genes.

Indexed as

Evolution, MolecularFishesOpsinsPhylogenyPineal GlandRhodopsinAmino Acid SequenceAnimalsGene DuplicationIntronsOpsinsRhodopsinOpsinPineal glandPinopsinRetinaRetroduplicationRhodopsin

Identifiers

PMID39379743
PMCPMC11461388

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.