Evidence map›Paper›PMID 39383866›Full record

ArticleCell metabolism2024

Multi-omic human pancreatic islet endoplasmic reticulum and cytokine stress response mapping provides type 2 diabetes genetic insights.

Eishani K Sokolowski, Romy Kursawe, Vijay Selvam, Redwan M Bhuiyan, Asa Thibodeau, Chi Zhao, Cassandra N Spracklen, Duygu Ucar, Michael L Stitzel

Abstract read
In one paragraph

Article in Cell metabolism, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Mitochondria-associated programmed cell death in pancreatic β cell of T2DM.Apoptosis : an international journal on programmed cell death · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
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  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Eishani K SokolowskiThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA; Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT 06032, USA.
Romy KursaweThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Vijay SelvamThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Redwan M BhuiyanThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA; Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT 06032, USA.
Asa ThibodeauThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Chi ZhaoDepartment of Biostatistics and Epidemiology, University of Massachusetts, Amherst, Amherst, MA 01003, USA.
Cassandra N SpracklenDepartment of Biostatistics and Epidemiology, University of Massachusetts, Amherst, Amherst, MA 01003, USA.
Duygu UcarThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA; Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT 06032, USA; Institute of Systems Genomics, University of Connecticut, Farmington, CT 06032, USA. Electronic address: duygu.ucar@jax.org.
Michael L StitzelThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA; Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT 06032, USA; Institute of Systems Genomics, University of Connecticut, Farmington, CT 06032, USA. Electronic address: michael.stitzel@jax.org.

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI Mark D ADAMS · 1985 to 2026
$61.9M
The Human Islet Distribution Coordinating Center (UC4)UC4DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI EVANS-MOLINA, CARMELLA, NILAND, JOYCE CAROL · 2012 to 2017
$25.6M
A deep longitudinal analysis of next generation influenza vaccines in older adultsU01AI165452 · NIAID · JACKSON LABORATORY · PI Adolfo Garcia-Sastre, GEORGE A KUCHEL · 2022 to 2026
$9.0M
Genetic programming of human islet metabolic and endoplasmic reticulum (ER) stress responses in diabetesR01DK118011 · NIDDK · JACKSON LABORATORY · PI Michael Lee Stitzel · 2021 to 2026
$4.9M
Genomics and Epigenomics of the Elderly Response to Pneumococcal VaccinesR01AG052608 · NIA · JACKSON LABORATORY · PI BANCHEREAU, JACQUES F · 2016 to 2019
$2.5M
Dissecting the roles of type 2 diabetes-associated variants and effector genes in islet endoplasmic reticulum stress responseF30DK130582 · NIDDK · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI BHUIYAN, REDWAN · 2022 to 2025
$194k
NCI NIH HHS P30 CA034196NIAID NIH HHS U01 AI165452NIA NIH HHS R01 AG052608NIDDK NIH HHS F30 DK130582NIDDK NIH HHS R01 DK118011NIDDK NIH HHS UC4 DK098085
6 · The paper itself

Abstract

Endoplasmic reticulum (ER) and inflammatory stress responses contribute to islet dysfunction in type 2 diabetes (T2D). Comprehensive genomic understanding of these human islet stress responses and whether T2D-associated genetic variants modulate them is lacking. Here, comparative transcriptome and epigenome analyses of human islets exposed ex vivo to these stressors revealed 30% of expressed genes and 14% of islet cis-regulatory elements (CREs) as stress responsive, modulated largely in an ER- or cytokine-specific fashion. T2D variants overlapped 86 stress-responsive CREs, including 21 induced by ER stress. We linked the rs6917676-T T2D risk allele to increased islet ER-stress-responsive CRE accessibility and allele-specific β cell nuclear factor binding. MAP3K5, the ER-stress-responsive putative rs6917676 T2D effector gene, promoted stress-induced β cell apoptosis. Supporting its pro-diabetogenic role, MAP3K5 expression correlated inversely with human islet β cell abundance and was elevated in T2D β cells. This study provides genome-wide insights into human islet stress responses and context-specific T2D variant effects.

Indexed as

CytokinesDiabetes Mellitus, Type 2Endoplasmic Reticulum StressIslets of LangerhansEndoplasmic ReticulumHumansInsulin-Secreting CellsMaleMultiomicsPolymorphism, Single NucleotideTranscriptomeCytokinesbeta cellcis-regulatory elementER stressGWAShuman isletsMAP3K5/ASK1multiomicsproinflammatory cytokinestype 2 diabetes

Identifiers

PMID39383866
PMCPMC11798411

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.