Evidence map›Paper›PMID 39385185›Full record

ArticleBMC biology2024

TransCDR: a deep learning model for enhancing the generalizability of drug activity prediction through transfer learning and multimodal data fusion.

Xiaoqiong Xia, Chaoyu Zhu, Fan Zhong, Lei Liu

Abstract read
In one paragraph

Article in BMC biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xiaoqiong XiaInstitutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.
Chaoyu ZhuIntelligent Medicine Institute, Fudan University, Shanghai, 200032, China.
Fan ZhongIntelligent Medicine Institute, Fudan University, Shanghai, 200032, China. zonefan@163.com.
Lei LiuIntelligent Medicine Institute, Fudan University, Shanghai, 200032, China. liulei_sibs@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAccurate and robust drug response prediction is of utmost importance in precision medicine. Although many models have been developed to utilize the representations of drugs and cancer cell lines for predicting cancer drug responses (CDR), their performances can be improved by addressing issues such as insufficient data modality, suboptimal fusion algorithms, and poor generalizability for novel drugs or cell lines.

resultsWe introduce TransCDR, which uses transfer learning to learn drug representations and fuses multi-modality features of drugs and cell lines by a self-attention mechanism, to predict the IC

conclusionsTransCDR emerges as a potent tool with significant potential in drug response prediction.

Indexed as

Antineoplastic AgentsDeep LearningCell Line, TumorHumansPrecision MedicineAntineoplastic AgentsCancer cell lineDeep learningDrug representation learningDrug response predictionMultimodal learningTransfer learning

Identifiers

PMID39385185
PMCPMC11462810

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.