Evidence map›Paper›PMID 39385609›Full record

ArticleDisease models & mechanisms2024

RNA sequencing reveals molecular mechanisms of endometriosis lesion development in mice.

Kavita Panir, John E Schjenken, James Breen, Hon Yeung Chan, Erin Greaves, Sarah A Robertson, M Louise Hull

Abstract read
In one paragraph

Article in Disease models & mechanisms, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kavita PanirRobinson Research Institute and School of Biomedicine, The University of Adelaide, Adelaide, SA 5006, Australia.ORCID 0000-0001-7139-819X
John E SchjenkenRobinson Research Institute and School of Biomedicine, The University of Adelaide, Adelaide, SA 5006, Australia.ORCID 0000-0001-6293-6160
James BreenRobinson Research Institute and School of Biomedicine, The University of Adelaide, Adelaide, SA 5006, Australia.ORCID 0000-0001-6184-0925
Hon Yeung ChanRobinson Research Institute and School of Biomedicine, The University of Adelaide, Adelaide, SA 5006, Australia.ORCID 0000-0001-9841-2094
Erin GreavesCentre for Early Life, Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0001-9165-5851
Sarah A RobertsonRobinson Research Institute and School of Biomedicine, The University of Adelaide, Adelaide, SA 5006, Australia.ORCID 0000-0002-9967-0084
M Louise HullRobinson Research Institute and School of Biomedicine, The University of Adelaide, Adelaide, SA 5006, Australia.ORCID 0000-0003-1813-3971

Funding

Allan and Joyce Ballantyne Medical and Surgical Education and Research Trust GrantAustralian GovernmentAustralian Government Research Training Program ScholarshipUniversity of Adelaide
6 · The paper itself

Abstract

Understanding of molecular mechanisms contributing to the pathophysiology of endometriosis, and upstream drivers of lesion formation, remains limited. Using a C57Bl/6 mouse model in which decidualized endometrial tissue is injected subcutaneously in the abdomen of recipient mice, we generated a comprehensive profile of gene expression in decidualized endometrial tissue (n=4), and in endometriosis-like lesions at Day 7 (n=4) and Day 14 (n=4) of formation. High-throughput mRNA sequencing allowed identification of genes and pathways involved in the initiation and progression of endometriosis-like lesions. We observed distinct patterns of gene expression with substantial differences between the lesions and the decidualized endometrium that remained stable across the two lesion timepoints, and showed similarity to transcriptional changes implicated in human endometriosis lesion formation. Pathway enrichment analysis revealed several immune and inflammatory response-associated canonical pathways, multiple potential upstream regulators, and involvement of genes not previously implicated in endometriosis pathogenesis, including IRF2BP2 and ZBTB10, suggesting novel roles in disease progression. Collectively, the provided data will be a useful resource to inform research on the molecular mechanisms contributing to endometriosis-like lesion development in this mouse model.

Indexed as

EndometriosisMice, Inbred C57BLAnimalsDisease Models, AnimalEndometriumFemaleGene Expression ProfilingGene Expression RegulationHumansMiceSequence Analysis, RNATranscriptomeEndometriosisImmune regulationMouse modelRNA Sequencing

Identifiers

PMID39385609
PMCPMC11524442

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.